GgaINT1005015 @ galGal4
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75542475-75543231:+
Coord C1 exon
chr1:75542475-75542642
Coord A exon
chr1:75542643-75543000
Coord C2 exon
chr1:75543001-75543231
Length
358 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCTTTCTCTCTCTTACCAGGCA
3' ss Score
11.92
Exon sequences
Seq C1 exon
ATCAAAGTCATTGACTACAAAGGCAAGATGCTGAAGTACAAAAAAGTCCTCCTTGTAGTAAGTTTTGGTGAGCAGCAGTTTCAGCAAAAGTACCTCACTGGGGACACTGGAACAGCTTCGTTTAGCCTAAACACAACTGCTTGGAACAGCACCTCAGTCTCCCTGGAG
Seq A exon
GTAAGTGAGGAAAATTCTATATCATTGCCTATGAAAGCAAGGGGTAAACATGCTTCTCAGTGAGTACTGCCCCAAAGACATGTCCCCCGTTCCTTTCTGAGGGACTAAAATTCCAACTCAAAACAACTCAGCATGTTGTGGATCTTGATGCTTATTCTCTGAATCCCAACAGCTTTCCTCATGAACTCTTCACACAGAGATGTGTGTGATAGTGTTGTTAAGGAGTAGCCTGAGCTTTCTAACATGCAACAGCTGGATTGATCTGCAGCTGACTTGCTTAACTAAAGAAATAATCCGTTGTGTGTGTTTTGTGGTTGTTTTTTTTTCTTTTCTTTTTTTTCTTTCTCTCTCTTACCAG
Seq C2 exon
GCAAGTGTCCTGCATCAAGATATGGATAGAGAGCCAGGGACAGTTGATTTGAATTACATGAGAGCCTCTCATTTCATACGTCCATTCTACAGCACCAGCAGGAGTTTTCTCAGTATTGTCCATGTGCCAGAAATGATGCCCTGTGGTAAAAAGCAGGCTATCCAGGTGGACTTCAGAATTTACCAGGAAGACCTGGAACATGGGCCCAAGCGTGTAATTTTCTCCTACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000037222:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGCAAGATGCTGAAGT
R:
GCCCATGTTCCAGGTCTTCCT
Band lengths:
357-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]