GgaINT1005383 @ galGal4
Intron Retention
Gene
ENSGALG00000014305 | ACTN4
Description
Gallus gallus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_205126]
Coordinates
JH375654.1:86872-87301:-
Coord C1 exon
JH375654.1:87220-87301
Coord A exon
JH375654.1:86958-87219
Coord C2 exon
JH375654.1:86872-86957
Length
262 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CCCTCACTGTTCACTTACAGACA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GATGACCCCGTGACCAACCTGAACAACGCCTTTGAGGTGGCAGAGAAGTACCTGGACATCCCCAAGATGTTGGATGCCGAGG
Seq A exon
GTAAGCTGCACATCCGCACGCAACAAGCGCTGGAGCTCAGCTGGCACATCTCCTCCTGCAGACACAGAGGACGTGCTGGCAGCCAGCCCCGCTGGGCGCCGTGCGTTGGGACGCTGTAATCACCTTCTGCCCATACAGGAGTGTTTATTTAGCCTGCCTGCCTGTGGGATGCACACCGCAGCTCCCGGTCCCGGCGTGGTGAGCGGCTCCGGCTCGCAGGGTGCGCTCCCCTCTCATCCTAACCCTCACTGTTCACTTACAG
Seq C2 exon
ACATTGTCAACACAGCTCGCCCCGACGAGAAGGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTTTCAGGGGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305:ENSGALT00000023128:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCCCGTGACCAACCT
R:
CTTCTGAGCCCCTGAAAAGG
Band lengths:
168-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]