GgaINT1005406 @ galGal4
Intron Retention
Gene
ENSGALG00000018934 | ACVRL1
Description
activin A receptor type II-like 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
JH375504.1:10604-11701:+
Coord C1 exon
JH375504.1:10604-10879
Coord A exon
JH375504.1:10880-11503
Coord C2 exon
JH375504.1:11504-11701
Length
624 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
ATCCACCCCTCCACCCCCAGGTC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GCTTCATCGCCTCCGATATGACCTCGAGGAACTCCAGCACCCAGCTGTGGCTCATCACCCACTACCACGAGAACGGCTCGCTCTACGACTACCTGCAGAGGACAACCCTGGACGTGGAGACCTGCCTGGGCTTGGCAGCCTCCATCATCTGCGGCCTCGTCCACCTCCACGTGGAGATCTTTGGCACGCAGGGCAAACCCGCCATCGCTCACCGTGACCTGAAGAGCAGGAACATCCTGGTGAAAAGCAACCGGCAGTGCTGCATCGCCGACCTGG
Seq A exon
GTGAGAGCGCCCCTTGGGGACGCACGGTGCCACCCATCCATCCACGCACCCGTCCGTCCAGGCATCCATACATTCATCCACCCCTCCATCCATTCCTCCATCCAACTCTCCACCCATCGCTGCATCCACCCCTCCACCCATTCGTCCATCCAGCTCTCCATCCATCCAACCCTACATTCACTGCTACACCCATCCAACCCTACATCCATCCATCCGGCCTCCCATCCGTCCAATCCTGCATCCAACCCTACATCCAACCCTCATCCACCCATCCATCCAACCCTATATCCAACACTACATCCATCCAACCCCACATCCCTCCATCCATCCAACCCTACAACCAACCCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCATCCACCCCTCCCATCCAACCCCACCATCCCTCCCATCCAACCCTTCCCTCTTCCCATCCATCCAACCACCCCTCCATCCACCCCTCCACCCCCAG
Seq C2 exon
GTCTGGCCGTCATGCACTCCCAAGGCAGTGACTACCTGGACATTGGCCACAACCCTCGGGTGGGCACGAAGCGTTACATGGCCCCAGAGGTGCTGAGCGAGCAGATCCGCACCGACTGCTTCGAGTCCTACAAGAAGACGGACATCTGGGCATATGGGCTGGTGCTGTGGGAGATCACCCGGCGCACGGCTGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018934:ENSGALT00000035985:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(34.8=100)
A:
NA
C2:
PF0006920=Pkinase=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTACCTGCAGAGGACAA
R:
GCCCAGATGTCCGTCTTCTTG
Band lengths:
343-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]