GgaINT1005466 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6916097-6916852:+
Coord C1 exon
chr17:6916097-6916278
Coord A exon
chr17:6916279-6916716
Coord C2 exon
chr17:6916717-6916852
Length
438 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ACCACCTCTTCTTTCATCAGGTT
3' ss Score
10.48
Exon sequences
Seq C1 exon
CTGTGAAGGTTAAAGGTGAATATGTGGTTGCTGGAAAGGGAAAAATCTCACTGAATGTCACCTATCCCTCAGTTCTGGAGGACAGACAGATTGAATACAAAGTGTTTCTCACCAACCACAACCTCCCAAGCCTGGAGGAAATCCATGTGGATGGACCAATCCAAGAAGAAATTGAAATACAG
Seq A exon
GTAAATAAACAGCAGGATTGGAAAGGGGCCAGTCAGAACTGGCCAGACTGAGTTTGTGTGGCTCTGTTGAGTGCAGTTAACAGAGATGCAGTGGGCTTTGTGCCCGAGACTGCTGGAACTGGTGTTCATTAAGAGCAATGGTCATCTTCCTGGGTAATGCTGAGGGCGTGCTGCCTGCAGGCTTTCTGTAGGTCTAGGGAATGGGCATGTGTGGGAAAAGGCATACCAAGTCAAACCTGTAGCTTGGCTTAGTCTTTTTTTTTTTTTCTCCTCTGCCTAGTGCACGGAATTCACTCTAACTGTACCTGGGAAGAACTGGTTGTTGTAGCATTGAGGCTCAGGTCTGGATAAGAATGAAGGACTATCTTCTCTCATATCTCTGCTCACAAATGATTGTGAGTTGATCTGTGTATTGACCACCACCTCTTCTTTCATCAG
Seq C2 exon
GTTTATAGAAGGTATGCAAAAGAATATGGCGATGCCACCAACCCAGACATCACCTTCAGCTACTTTGTGCCAAAAGAGAATCTGACGTATAGGTGGATTCCTCACGAGGGGCCGTGTTCAGTGACCTGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(48.0=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(18.4=50.0),PF0009014=TSP_1=PU(25.5=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAAAGGTGAATATGTGGTTGCT
R:
AGGTCACTGAACACGGCCC
Band lengths:
303-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]