GgaINT1005469 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6918930-6919631:+
Coord C1 exon
chr17:6918930-6919119
Coord A exon
chr17:6919120-6919463
Coord C2 exon
chr17:6919464-6919631
Length
344 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
AATACATCACTGTCAAACAGGGA
3' ss Score
4.91
Exon sequences
Seq C1 exon
GTGGAAGATATCTCAGACAGATGAATGCTCTGCTGTTTGTGGAAGCGGCGTTGCCCAGCAGAATCTGACCTGTGTTCAGTTTCATAATGGATCGGAGACTGTTGTGGATGACAGCTTATGTTCTGCACGAGAAAAACCACTCTCCATTGTGCCGTGTGTAGTTAATGTCTGCCCTTTGGGATGGGACAGA
Seq A exon
GTGAGTTTATTAGCTTGGCATTCAGGTGACCTGAGAGCTTTGCACTTGTGATCCACATGAGGCTATCAGTTAGAAGGAACCGCTTTATTAGTGGAGTCTGGGAGGGGTGGTTTACACAAAGGACATTTATCCAATTAAAGGTTAATTCTGTGACTTTAGGAAGCTCTGTCCCTCTTAATTTATGCTGCTGGATTTAACAGTTATTAGCAGAGGCTTGTTTATGGCAGCTGTGGACTACATTCCATCTTTGCTTCTCCACAGAGTCCAAAAAACAAAACAAAAAAAAAAAAATCAGAAACTCAAATAACCTTTGTTGCATTGATAAATACATCACTGTCAAACAG
Seq C2 exon
GGAGGTTCTGATGTGGGAGGGAAGACTGCCAACAGGGAAGAGGGCTTCTCAGCAATGGATCACAGATGCAAATCCATTTTGGAGAACCTCTGCCAGGTTTACGCTTACAGAGGGGAAGAGACTGCTTTAGGCATCTCTCTTCAGTCTCGGGTATCTATTCAGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGATGAATGCTCTGCTGT
R:
TGAGGCTGAATAGATACCCGAGA
Band lengths:
344-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]