GgaINT1007334 @ galGal4
Intron Retention
Gene
ENSGALG00000024372 | BFIV21
Description
MHC BF2 class I precursor [Source:RefSeq peptide;Acc:NP_001026509]
Coordinates
chr16:61045-61306:+
Coord C1 exon
chr16:61045-61152
Coord A exon
chr16:61153-61269
Coord C2 exon
chr16:61270-61306
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ATTCATCTCTCTGTCTGCAGGGA
3' ss Score
10.55
Exon sequences
Seq C1 exon
AGCCGCCACAGCCCAACCTGGTGCCCATCGTGGCGGGGGTGGCTGTCGCCATTGTGGCCATCGCCATCGTGGTTGGTGTTGGATTCATCATCTACAGACGCCATGCAG
Seq A exon
GTAAAAGCAGAGGGGTGCAGGCGGGCCGTGGGGGCAGTGGGGGCATCTGGGTCCCCCTAGGGAGCCCTCAACCTGGCTGTGATGTGAACCTGTGTTGATTCATCTCTCTGTCTGCAG
Seq C2 exon
GGAAGAAGGGGAAGGGCTACAACATCGCGCCCGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024372:ENSGALT00000046170:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.578
Domain overlap (PFAM):
C1:
PF086935=SKG6=WD(100=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCCAACCTGGTG
R:
ACCGGGCGCGATGTTGTA
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]