GgaINT1007359 @ galGal4
Intron Retention
Gene
ENSGALG00000000141 | BLB1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSZ6]
Coordinates
chr16:102872-103266:+
Coord C1 exon
chr16:102872-103153
Coord A exon
chr16:103154-103235
Coord C2 exon
chr16:103236-103266
Length
82 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CGCCGCCTTCGTCCCCGCAGAGC
3' ss Score
12.79
Exon sequences
Seq C1 exon
TGGAGCCCAAGGTGAGGGTCTCGGCGCTGCAGTCGGGCTCCCTGCCCGAAACCGACCGTCTGGCGTGCTACGTGACGGGCTTCTACCCGCCGGAGATCGAGGTGAAGTGGTTCCTGAACGGGCGGGAGGAGACGGAGCGCGTGGTGTCCACGGACGTGATGCAGAACGGGGACTGGACGTACCAGGTGCTGGTGGTGCTGGAGACCGTCCCGCGGCGCGGGGACAGCTACGTGTGCCGGGTGGAGCACGCCAGCCTGCGGCAGCCCATCAGCCAGGCGTGGG
Seq A exon
GTAAGGCCCCCGGGCCCTGCCCCGCCGCGGGGGGAGCGGGAGCGCGGCCCCCGGCGCTGAGCCGCCGCCTTCGTCCCCGCAG
Seq C2 exon
AGCCGCCGGCGGACGCGGGCAGGAGCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000141:ENSGALT00000008925:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]