GgaINT1007442 @ galGal4
Intron Retention
Gene
ENSGALG00000013295 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
JH376279.1:16786-19919:-
Coord C1 exon
JH376279.1:19791-19919
Coord A exon
JH376279.1:16996-19790
Coord C2 exon
JH376279.1:16786-16995
Length
2795 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGTTTTCCATCTCTTTGCAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
TCCAAACTGGAGAACCGGGAGTACAGAGATGCTCAGGAATTCGCTGCTGATGTGCGACTGATGTTTTCCAACTGCTACAAATACAACCCTGCTGACCACGAGGTGGTGGCCATGGCACGGAAGCTGCAG
Seq A exon
GTAGGGAGCTCCGTTATCTTCCCCTGCTAATTAATCCTGCGTTGTCTCAAAACAACACGAAATGGGTGGAGAATGGTAAGGAAACGACGGCCTAGTTTCGTTTCATGGCATCTTTTTCTCATTGATTCGTATTGATTTTGAAGGAGTGGGAGAAAACACAACGCTCTGAAGGGTCCCTTTCCTGCGCACAGCACCTGGAGAGAGCACAGGGGTTGTGCCACCCTCTCACTGCTGCCATGTCTGTTAATCCTGACCCTGTTTTCTGCTCTCTCCTGGTTCCTGCAGCACGAGAATGGTCTGTAATTCATGATACAGCCGCAGAAAGCTGCAGACGCTGAGTGCAGCTCTTAGCAGAGCTCTTCTGAGAGGCAGCTCTGAGCTCTGTGCCTCTCCTGCCTCTGTGCCCCCCGAGTTCGAGGCCCTGAAATCACCTCGTGATGCTCTTGTAAAACTGCAGTCAGGTTTGGGCTGGTTTAATTGGAGATCATCACACACTGAGTGTGTGGTTCAACAGCTTTTTGGTGTGGAATTGGCAGCATTCTGCATGTTACCTATTGCTCTGCTGGGTTGTATGGCAGGTGGACATCCAGAAACCACACTGCTCAGCCTCTGGCTGCTCTTGGTCCAGAGGAGAACTTCACAGCCACTTCCAGTGGTATTGTGGAGCGTTTTCCAGGAGCCTGAGGTGTCTTTTCTCTCACTCCATCCAATGGGGAAAGCTTTGCTCATTTGTGAAGCTGCTCCAGCAGCACTTGCACTGCGGGCCTGTGCATAAAACTGATCCCAGCTGAAACCAAGTATAAAAAATCTGATCTGAAATGAGATACGGATATGAGCAGCTTCACAGGGTGCTGCTGAGGTTTGGAGCCAGGCTGAGATCTCAGGTCTGGACAACGGGTTACTGAGTTCCCATCATCCACAGCAGCGCCACACATTGCTTTACACACAGCCCCATTTTTCACCTGTCCCAAAACGTGGCTCAGCATCAGCCCCCAACGTAACGCCCTGGTGCCACCTGGTGCTGCTTTGCTGTTGGAAGGTGAGTTTGGAGGAATTCTGGTGCTCTTGAGAGCTCGCAGCGGGTGCCGCTCGTTGCTTTAACCTGCTTGGTGTTGGTGCAAGCAAGGGCAGAAAGAATCCCTTAATTAGCTTGTTATCTGCTTCTTCGTTAGGGTTTATCTTTCATCTGTTCCTGCTGAGTGCACGTGGAGTGCTGAGGATTTTTGCAGTGTTGGGGTTTTGTCATAACTGCAGAATTGGTTGTAGTGGACTTTGCTCAAATGGATCCCGCTCTGCTTTCGTAAGGGCTTACCGAAAAGCTGCACAGATACAGAAGTGTGGGGAGGTTTTGTTTCTGACCCAGAGGATGGAAGGATGGTGTCTGCACAGCGTTGGCTGCTGGCGGTAATCAAGCACTGGATTTTCTGGTTCGTGGGAAACTGCAATTAGCTCATAAACACTCATTAAGTGCAGTGAGTCAGCGCATGGCAGAGGGAGCAAAGCCAGGAGTCCAGGCTCCTTCCCTGCCCAACCTTCAGTCCCTGTGCCAGGAGCCTGGGAGAGAATGCGGCATTGCTGCCAGCAGATGGAAGCAGCGAAGTGACGTTACAGCTCCGGAGGAGAGGAGCAGAGCTGGAGGAATGCAGCCCAGCTCATGCATGGAGGGAGCTCAGAGGTGGCTCAGGAAAGTGCTGGAGGACCCCATGGTGACCTCAAGGATGGGCCTGATCCGATATTTTGGGGGGCTGAAGGTGGGAGCTGCATGGAGAGGGACGCTGCTCGGTGCCTGGTGGAAGAATATCTCTCTCTGAGTTGTTGTGTGAGACATTGGAGCTGAGATTCACAATAGGGTGGTAGGAGCAAGGCACGCACCTCGTGCTCTGGGTTCTGCACCAGAGCTGCACACGTGGGGCGTACAAATGGATGGATGGTGACCGTGGTCTGAACATCACCCTCTGCTGAGCAGCAGAATTCAGCCGCATCCCCTCTGGATCCCTCCTTGGGGGCTCCCAGGAGTGCGTGATGACAGTGCAGAGCTTTGAACCGTGGGGTTGAGGTCTCTTGGAGCTGCCCAAAGTGGTGTTTCTCCTGCAAGTAGTGCTTGTTCTGTCCTGGGAAACGAAAGGAAGGCAAAATCTGAGGGTGCTGCTTTGTTCCTGTCCTGGGAAACGAAAGGAAAGCAAAATCTGGGGGTGCTCACACTCCCTGTGTGGGACCCGGAGCTGCTGGCTCAGTGCTGGACCTGAGAACATTGCTGGACCTGAGAACGTTGCTTCACCCGAAATACCATAAGCGGAACGTTGTGAGCACAGCACAGCCTTCACCCCCACCATGCTGATAAGGGACACAATCAGCCTTTCATTTCTTATCTCACTCTGAGGTCTGGACAGAAGTGAGTGTTCATCAGCAGAATAGCAACGTTCACGTCTGTGGGGTGAAAGGAAGGCGGTTTGGTGTCGCTGGGTGGTGGGAAGTGCTTTCCCAGCCTTGGGGTGTTGTGTTGGGATGGAAAACCACAGCGTGCCAACTGCTGCCCTCACGTTACCACCAGCACTGCAGCTGTTAAATGGCTCTTTACCTTCCTTACCTCTAAACTTTCCCCTCTGATCAAACCAAAGTCCCAAACGGATTCAAGGCGTGGAGGAAACGATCCCATCTGCAGCTGACAGCATCGTGTGTGCACGCGTTGGGGGCTTGGATGGAGACCCCGAGCACATGGGATACCCCGGGGATGATAACAGCCTGTGCTGTTGTGTGCTCTGCCAACCCCTGCATGGTTTTCCATCTCTTTGCAG
Seq C2 exon
GACGTGTTTGAGATGCGCTTCGCTAAGATGCCGGACGAACCGGAGGAACCGGTGATCCCGGCCTCTTCTCCGGTGGTGGTACCACCTCCAACCAAAGTGGTTCCCCCCTCGTCCAGTGACAGCAGCAGCGACAGCTCCTCCGACAGCGACAGCTCCTCCGACGACTCCGAGGAGGAGAGAGCTCAGCGGTTAGCAGAGCTCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295:ENSGALT00000035893:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0),PF057648=YL1=PU(18.5=93.0)
A:
NA
C2:
PF057648=YL1=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]