GgaINT1007561 @ galGal4
Intron Retention
Gene
ENSGALG00000000136 | Blec2
Description
putative NK receptor [Source:RefSeq peptide;Acc:NP_001038147]
Coordinates
chr16:109129-109742:+
Coord C1 exon
chr16:109129-109227
Coord A exon
chr16:109228-109607
Coord C2 exon
chr16:109608-109742
Length
380 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCCCAGGTTGTGCCCAAAAGTCT
3' ss Score
-1.39
Exon sequences
Seq C1 exon
TGTGGGCTCTTCCAGTTCCGTGGGACTTCCAGAAAGCCTGCATGCTGGGGGTGCTGCTGCTGCTGCTGCTGCTGCTGGTGACAGGGCTCAGCATGTGCG
Seq A exon
GTGAGTGATCAGATCCCAACCACATTGCTGCACAGGAAATCGAAGCTCTTCTGAGCAGAAAACACATTCATTCTGCCCAAAGTGGGGCTGGGGCTTTGCACTGGAGTTTGGGTGATCACACAACAATTCCAAAGTGGCACTCAGTGAGAGGAATTCCCTTCTGCAAGAGCCTCTCTGCTCTTAAACCAAGGGGGGGACAGAAGCAGTAAACATCATGTCTAATTATATACAAAATATGGTTTTAGACAGTTTAATTAACTGAGTGCAACCATAGCCAGAAAGGCTTTGCAAAAGAGCTCAAGGATCCAACCCCAACCCTGCGTGGTTTCCACGGGGTTGGCCCCATAGGGCCGCGTCTCACCCCAGGTTGTGCCCAAAAG
Seq C2 exon
TCTTTCAGAAAACAACACCACCTCCAAGCGCTGCCCGGCACTGCCCTGAGACCAACGGGAGGAATGGGACAGAGCTCTGCAAGAATACCTCCATTGAGCAGTACTTCTGCCAATCCAAATTGAGCAGCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000136:ENSGALT00000000188:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCTCTTCCAGTTCCG
R:
CAGAGCTGCTCAATTTGGATTGG
Band lengths:
231-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]