GgaINT1007663 @ galGal4
Intron Retention
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6931329-6931647:+
Coord C1 exon
chr17:6931329-6931454
Coord A exon
chr17:6931455-6931539
Coord C2 exon
chr17:6931540-6931647
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
GGGCTGCTTCTCTCTTCCAGGAT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCTCAACGCCTTCGTCCTGTTCCTGTGCGAGGCTCCGTTCTGCTGCCAGTTCATCGAGTTCGCCAACGCCGTGTCTGCGAGGGCAGACAAGCTGCGGGCCTGGCAGAAAGCTGCTTTCTACTGCGG
Seq A exon
GTGAGGATGCAGCCGGGGCCGGGCAGTGCTGGGTGTGTGGGGCGCTGTGTCCTCATGCCACCCCAGGGCTGCTTCTCTCTTCCAG
Seq C2 exon
GATGGCTGTGTTCCCTGTCATGCTCAGCCTGACGCTCACCACTCTCTTTGGAAATGCCATTGCGTTTGCGACCGGGGTGCTGTATGGCCTGTCAGCTCTTGGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576:ENSGALT00000042742:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(38.2=100)
A:
NA
C2:
PF102334=Cg6151-P=FE(32.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCATCGAGTTCGCCAA
R:
CCAAGAGCTGACAGGCCATAC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]