GgaINT1007664 @ galGal4
Intron Retention
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6931540-6933084:+
Coord C1 exon
chr17:6931540-6931647
Coord A exon
chr17:6931648-6932071
Coord C2 exon
chr17:6932072-6933084
Length
424 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
GATGTCCCTTCTCTCTGCAGGGG
3' ss Score
12.62
Exon sequences
Seq C1 exon
GATGGCTGTGTTCCCTGTCATGCTCAGCCTGACGCTCACCACTCTCTTTGGAAATGCCATTGCGTTTGCGACCGGGGTGCTGTATGGCCTGTCAGCTCTTGGCAAGAA
Seq A exon
GTAAGAAAGGATTTGCTTGCTTGGGGAGGGGAGGGGACCTCCAGCCCTGCCCCCATCTGCTGCCCCAGCTCTAAGGAAGGCTGTGCTTTCCTCTTGTATCAACCGCGCTTTTGGGTGTGAATGCTGCTGGAGGGTATGTCCCTGCTGGAGTGCTTTCTCTCCAAACAAAACCCCTTGAAAGAAGGTCTGGGGGTCTGCTGAACCTCTGAGCTTTCCCTTGGCAGCTCAGTGTAGGTTGCCCCAGGAAAGCCTTTGTGTCCCAACAGGGGTGAGGCTGGGAAGGGCCAGCAAGTCTCATTTCATTCCTGTTGTCACTTGGTATGGAGAGGCCTTGGCACAAGCTGGGAGACATTTGTACTGTGTGCTGTACTGATGGGATGGGTGCCCGGTGCTCACGTCACCCTGATGTCCCTTCTCTCTGCAG
Seq C2 exon
GGGAGATGCCATTTCCTACGCTCGGATCCACCAGCAGCAGAAGCAAATGGATGAAGAGAAGCTCACGGGGTGCCTGGAGGGACAGGCTCTGTGAAGTGCGTGAGCCCAGGGTGACCTTTTGGACCCTGAGATGGTGGTGAAGATTTGGAAACCCACTCTGCCCTCCCCTCTGCTCAACCCCTCTCCATCACTCCACGATTTCCCTGGACACTACAGCAACAACTGGAGCTCTCAGGGCCGGGGTGGGCTGTGCCCCCCTCACACACCAGCAGTTGGACCTCAGTGCTTTGGCTGCTCCCTCCTCCTGCCCACTCAGAACCAAATATCTCATGGTCCTTCTTTTTCTTTCTTTCTTCCTTTCTTTTTTTTCTTCTTTTTTTATGGCAGGGGTGCTGGCCCTTTGAGTGCTGCTGTATAAGCCTAAACACGTAGCCTTTCTCTGGTTTTGATGCCCATCACATTTTGCTGGGAACTGTGTGTGGGCAGCACACTCTTTGAGGACTGCTCCGGAGGTCTCATGCCCAGGGTGCTGCTGCACGTTACACATTTAATGCAGCACACTCTGGTGTGGCTCATTCCAGGCATAAAACACGGATGCAGTGTTGAGCAGTACCTGCTGACGCTTGCATTTGGTGTTCATCATCATCCAGGTTTTAATATAGGTCCAATTAGGTCGGACATTGGAGGCATCTCTGCACAGTAAAGGACTTCCAGCAAAAAAAACAACCATGCATGAAGACAGTGATGCCTCCAGAGGAGAGAAGCACAGTCTGCCCTTCCTCTGGATACAGCTTCAGGCAGATAATGCAATTTACTTGAATTATGACCATTAATTACGTAGTCTTAATAAGGGTACTTTTCTTCAGCTTCACTCTTTTACTGGGGAAGAAGGGAAGCGAGGCTGAAAAAGGGTGGTGTTGCTTGAGGCAAACAGAGGCAGTTTGCAGGTGGGATGGTTGCTGATGTGCAAGTGAGTCCCCTCTGAGCCCAGACAGACACTGCTCTGTTCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576:ENSGALT00000042742:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(32.7=100)
A:
NA
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTCACCACTCTCTTTGG
R:
GTCCAACTGCTGGTGTGTGAG
Band lengths:
356-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]