GgaINT1007892 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:47308-47742:-
Coord C1 exon
chr16:47572-47742
Coord A exon
chr16:47368-47571
Coord C2 exon
chr16:47308-47367
Length
204 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTCTGTCCCCATGTCCCCAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GACACGCTGGTGGCCCTGGAGGCGCTGGCCCAGATGTGGCTGCACTGGGGCCGTGGGAACACAATGGGGCTGAACCTGGGGCTCTCCTGGCCGGGGGGTGCCCGGGGGAGGGCTGGTGGCACTCAGGTTATGCTGAAGCCGGGGCTGGAGCCGCTGGAGCAGGAGCTGCAG
Seq A exon
GTGGGGACATGGCGGGATGTGGGGACACGAGGGATGTGAGGACACTGGGGACATGTCTGGACTTGGTAGGATGTGACATGAAGACACTGGGGGCATGGTAGGACATGGGGGACATGAGAACACGGGATGTGGGGGACATGGTAGGACATGATGGACACAGGGCTTTGGGGTCCTTGGGTCCTCGCTCTGTCCCCATGTCCCCAG
Seq C2 exon
GTGCCTCTGGGCAGCCCAGTGACAGTGCAGGTGGAGGGACACGGCGAAGGGACGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.3=22.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATGTGGCTGCACTG
R:
GTCCCTTCGCCGTGTCCC
Band lengths:
196-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]