GgaINT1009459 @ galGal4
Intron Retention
Gene
ENSGALG00000009301 | CHRNA1
Description
Acetylcholine receptor subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P09479]
Coordinates
chr7:16305300-16306115:+
Coord C1 exon
chr7:16305300-16305339
Coord A exon
chr7:16305340-16305969
Coord C2 exon
chr7:16305970-16306115
Length
630 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TGCCATTTTGTCACTCACAGCCG
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATGGAGCTCTGCCGTGTGCTGCTCCTGATCTTCTCCGCAG
Seq A exon
GTAAATGGCGCGTCTCGGCAACCACCTTGGGCACGCTAGGTCCTCCATGTGGGTGTGGGACCATGGCTTTGCATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGCTTTGTGATGCTAAACCCTTTTCACTAAATCCCAGAAGTGAACCCAGCTCCTGCCCAGCCATCAGAAGGCAGCAGGGTGGGGGGCTTTGGTCGGCTAATGAAGTGCAGCACAACACCTGACCCGGCTGCCACGCTTCACTCACAGCATGGGGAGAGAAGCATGAAACACAAGGGGGCTGTGCAGAGAGTGGGGCCTGGCCAGCCTCGGGTCTGCCTGTGGGCAGCACGTCCCTGGGACAGCCCCGTGGTTCATCCCACCCCTCTCACTGATGCCATTTTGTCACTCACAG
Seq C2 exon
CCGGGCCGGCCCTGTGCTACGAGCACGAGACGCGCCTGGTCGATGACCTGTTCCGGGAATACAGCAAGGTGGTGCGCCCCGTGGAGAATCACCGCGATGCCGTCGTCGTCACCGTCGGGCTGCAGCTCATTCAGCTCATCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009301:ENSGALT00000015138:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]