GgaINT1009466 @ galGal4
Intron Retention
Gene
ENSGALG00000002707 | CHRNB2
Description
neuronal acetylcholine receptor subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_990144]
Coordinates
chr25:1235469-1236072:+
Coord C1 exon
chr25:1235469-1235513
Coord A exon
chr25:1235514-1235962
Coord C2 exon
chr25:1235963-1236072
Length
449 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGAGCACAGGTGCTGGCAGGAA
3' ss Score
-3.65
Exon sequences
Seq C1 exon
CACGAGCGGGAGCAGATCATGACCACCAACGTGTGGCTGACCCAG
Seq A exon
GTGAGCCCCATGCGAGAGATCCCAGTGCTTCCTACCTGCAGACTGCCTGCACCTTGCTGTGGGACCCCCATATCACCTGCTATGGGACCCCCATGCCCTCCTGCCTTGTACCCCCTGCCCTGTGATCCCCTTGCCCCAGGACCACCTCCCAGTTTGGTTCCCCTTTGCCCCATGCCTTGGAAATCCCTACCCTGGGACCCCCTTACCCCCTAATTGGGATCCTCACATCCCCTTCCCCATGACACCGACTGTCTCGGGTCTCACACACCCCCTGATTTGGATCCCCTATAGCCCATGATTTGGGACTCCTGTGCCCCCTGCCCTGTGATCCCACTGCTCCAGGACCCCCATACCTCCTGGGCTGGGACCCCTTTGCCCCATACCCCCCCCCCCGCCCCCCCAGTGCCCCCTCCCTGCGGTGGGGCTGTGCTGAGCACAGGTGCTGGCAG
Seq C2 exon
GAATGGGAGGACTATCGCCTCACCTGGAAGCCGGAGGACTTTGACAACATGAAGAAGGTCCGCCTGCCCTCCAAGCACATCTGGCTGCCTGATGTGGTACTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002707:ENSGALT00000004270:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(8.5=93.3)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]