GgaINT1009467 @ galGal4
Intron Retention
Gene
ENSGALG00000002707 | CHRNB2
Description
neuronal acetylcholine receptor subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_990144]
Coordinates
chr25:1235963-1237125:+
Coord C1 exon
chr25:1235963-1236072
Coord A exon
chr25:1236073-1236164
Coord C2 exon
chr25:1236165-1237125
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CAGCGCATCCCATCCCCCAGCGC
3' ss Score
3.81
Exon sequences
Seq C1 exon
GAATGGGAGGACTATCGCCTCACCTGGAAGCCGGAGGACTTTGACAACATGAAGAAGGTCCGCCTGCCCTCCAAGCACATCTGGCTGCCTGATGTGGTACTCTACAACAA
Seq A exon
GTAGGTGCTTTTTGGGGGGGGGAGGGGGGTGTGTGTGTGTTTGGGGGGACCCCAGCTGGGCCCCAGGGCTGACAGCGCATCCCATCCCCCAG
Seq C2 exon
CGCCGACGGGATGTACGAGGTCTCCTTCTACTCCAACGCCGTCATCTCCTACGACGGCAGCATCTTCTGGCTGCCCCCCGCCATCTACAAGAGCGCGTGCAAGATCGAGGTGAAGCATTTCCCCTTCGACCAACAGAACTGCACCATGAAGTTCCGTTCCTGGACCTACGACCGCACCGAGATCGACCTGGTGCTGAAGAGCGAGGTGGCCAGCCTGGATGACTTCACGCCCAGCGGCGAGTGGGACATCGTGGCGCTGCCGGGACGGCGCAACGAGAACCCGGACGACTCCACCTACGTGGACATCACCTACGACTTCATCATCCGGCGCAAGCCGCTCTTCTACACCATCAACCTTATCATCCCCTGCATCCTCATCACCTCCCTGGCCATCCTCGTCTTCTACCTCCCCTCCGACTGCGGAGAGAAGATGACGCTCTGCATCTCCGTCCTGCTCGCCCTCACCGTCTTCCTGCTGCTCATCTCCAAGATCGTGCCGCCCACCTCGCTGGACGTGCCGCTGGTGGGCAAGTACCTCATGTTCACCATGGTGCTGGTGACCTTCTCCATCGTCACCAGCGTCTGCGTGCTCAACGTGCACCACCGCTCGCCCACCACTCACACCATGCCGCCCTGGGTGCGCACCCTTTTCCTCCGCAAGCTCCCGGCGCTGCTCTTCATGAAGCAGCCGCAGCAGAACTGCGCGAGGCAACGCCTGCGCCAGCGTCGCCAAACCCAGGAGCGTGCCGCAGCTGCCACGCTTTTCCTCCGGGCCGGTGCTCGTGCCTGCGCCTGCTATGCCAACCCTGGGGCTGCCAAAGCCGAGGGGCTCAATGGTTACCGGGAGCGGCAGGGGCAGGGGCCGGATCCCCCGGCACCGTGCGGCTGCGGGCTGGAGGAGGCGGTGGAGGGAGTGCGCTTCATTGCAGACCACATGCGCAGCGAGGACGACGACCAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002707:ENSGALT00000004270:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(22.0=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=PD(68.3=34.9),PF103294=DUF2417=WD(100=48.3),PF0293211=Neur_chan_memb=PU(85.9=62.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAGGACTATCGCCTCAC
R:
CAGAAGATGCTGCCGTCGTAG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]