GgaINT1009609 @ galGal4
Intron Retention
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10802221-10802815:-
Coord C1 exon
chr7:10802725-10802815
Coord A exon
chr7:10802288-10802724
Coord C2 exon
chr7:10802221-10802287
Length
437 bp
Sequences
Splice sites
5' ss Seq
GATGTATAG
5' ss Score
-2.49
3' ss Seq
GACGGTTCTTTTCTTTATAGATG
3' ss Score
9.22
Exon sequences
Seq C1 exon
AGGAGCCATCGAAGGAAAAGATCCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTCAGAGTGGAGACGTACTAAGTGCAAGAT
Seq A exon
GTATAGAATATTTTTCAAAATTTATTAAATTCAGATATAGTAATTTCTTTTAGCATAAGATGCGAGGGGGCTTTGGCAGTCTTTTCTTTCTTTCTTTTTTGTTCTGTTTTATTTGGGGGGAGGGGGGATTGTTAATCTTCTTCTGGAGAACTTAAATGTATTTCTTTTTCCTTTTTCCCCCCCCCTTTTTTTTTTTAATCCCAAAACAGTAAATGCAATTAATGTGCTAGAATGAGATGCCTGTAAATGTGCATTGATGAGAGTTGTCCGATAATCTCTCTCAACCTAGTTATTGACATGTTTAAAGAAGCACAGTCTAGAATAACCTTCAGTGATAGCATTTAGCCTTTTCTGTTTGTTTTATTTTCATTTGCTTGTTTCTTTTAATGGCTGAGTAAGCTAACAACTTCTGGAGCTGACGGTTCTTTTCTTTATAG
Seq C2 exon
ATGAGATTGTTGCTACTTTGGGTGAAGGAGCTTTTGGAAAAGTGGTGGAATGCATCGATCACAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438:ENSGALT00000044904:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]