GgaINT1009616 @ galGal4
Intron Retention
Gene
ENSGALG00000014632 | CLK2
Description
dual specificity protein kinase CLK2 [Source:RefSeq peptide;Acc:NP_001026497]
Coordinates
JH375217.1:4072-4794:-
Coord C1 exon
JH375217.1:4704-4794
Coord A exon
JH375217.1:4263-4703
Coord C2 exon
JH375217.1:4072-4262
Length
441 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
CCCCTCCTCTCTCTCCCCAGCGC
3' ss Score
12.92
Exon sequences
Seq C1 exon
GAAGCAGAAGTATTTCTACCATGGCCGTTTGGACTGGGATGAGAACACCTCTGCTGGCCGTTACGTTAGGGACAACTGCAAGCCGCTGCGG
Seq A exon
GTAAGGTGGGGTGGGTGGGAGCACCCGGTTGCTTCATCCTTTTCTCATTGCAGAGCTTTACAGTGCCAGCCCCAGTTCTGAAGATGGTTCCTGTGGGCAAGGTTAGGCCACTGAAAGGCTCGGACCAGTGTCCTCCTGAAGGAGCCTTGGCTGTCCCACACATAAAACTAGGAAGACTGCAGCAGCCTGAGCTTAACCTGAAGTGGATGAGGAGGAGGGCAAGGAGACTTCAGGAAGTGCCTGGGAAGGAAAGAAAGGGGGGGAAGGGTGCAACTCAAGGGGTCCCCGCTTCGCAGGTGGCCTGGAGGTGGAGCTTAGGATCGGGGAAGGGCTGAGCAGACCTCCCCTCCCCCAACTTAGCTTTCAGCCCCGCAGAGTGCACTGTGAGCAGCACGGGGAGCAGCATCCTTGCCCTGACCTCCCCCTCCTCTCTCTCCCCAG
Seq C2 exon
CGCTACCTGACCTCCGAGGCTGAGGACCACCACCGCCTTTTCGACCTCATTGAGAGCATGCTGGAGTACGAGCCGTCCAAGCGCATCAGCCTGGCCGAAGCCCTCAAGCACCCATTCTTTGACGTGCTGGAGATGGAGCCGAGCACAAAGATGTGGGACTCTAGCAGAGACATCAGCCGGTGACGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632:ENSGALT00000023584:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(12.3=63.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAGTATTTCTACCATGGCC
R:
ACCGGCTGATGTCTCTGCTAG
Band lengths:
270-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]