GgaINT1009625 @ galGal4
Intron Retention
Gene
ENSGALG00000014632 | CLK2
Description
dual specificity protein kinase CLK2 [Source:RefSeq peptide;Acc:NP_001026497]
Coordinates
JH375217.1:5012-5408:-
Coord C1 exon
JH375217.1:5326-5408
Coord A exon
JH375217.1:5092-5325
Coord C2 exon
JH375217.1:5012-5091
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCACGTTTATCTCCCTCAGACA
3' ss Score
8.09
Exon sequences
Seq C1 exon
AGCTTGGCTGGAGCCAGCCCTGTGATGTCTGGAGCATCGGCTGCATCATCTTTGAGTATTATGTGGGTTTCACCCTGTTCCAG
Seq A exon
GTGAGAACTGTGTGCTGTGTGGCTTCCTCACAAGTGGTGAAAGAGGACGTTGGCTGCTTCCCAGTGCAGCCTGCAGCCTCTGGGACCGATGGAGTCCCCTCCATATGGCTGCAGTGTTGTAGAGATGACCGAAGCGTTGGCCAGCAAGGGCTCCTGAGCTGGGAATCCTCCAGGGCTGGCGGCAGAATGACTGGAATGTGTTCCATGCTTTTCCTTCACGTTTATCTCCCTCAG
Seq C2 exon
ACACACGACAACCGGGAGCACCTGGCCATGATGGAGAGGATCTTGGGGCCAATTCCTTCTCGGATGATCCGGAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632:ENSGALT00000023584:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAGCCCTGTGAT
R:
CTGGTCTTCCGGATCATCC
Band lengths:
156-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]