GgaINT1010430 @ galGal4
Intron Retention
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2529699-2531157:-
Coord C1 exon
chr8:2530962-2531157
Coord A exon
chr8:2529839-2530961
Coord C2 exon
chr8:2529699-2529838
Length
1123 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
3' ss Seq
CTACCTCTTCCTGTGTACAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
GCGTCAACTGCGAGCTGGAGGTGGACGAATGCCAGTCGCGGCCGTGCCAGAACGGCGCCACCTGCCGCGACGCGCCGGCCGCCTTCTCCTGCTCCTGCCCGCCCGGCTTCCTCGGCGCCCTCTGCCAGACGGACGTGGACGAGTGCGCCAGCGGCCCCTGCCTGCACGGAGCGCTCTGCGCCGACCGGCCCGGGGG
Seq A exon
GTGCGCGTGGGGCCGCGGCGGAGAGCGGGCGGAGGGTGGGTGGGGGTCAGGGAGGTGACCGCGAGGCCCTTTGCTCACTGTCCCCTCCCCTCGCTGGCAGGGCGGCAAGAAGTTAAGAACTGAAATGCCCTTGGCTCTGTGCAGCACTGATGAGCAACAGCTAAAATATCTGTGTGTTACCAACAGTGCTTGTCCTCCTCCAGCCACGACACAGCGTCGTACTAAGCACTAAGAAGAAAAAAGCAATTCTGTCCCAGCTGAAACCAGGACAAAATGGAATCTGCCAACAGCAGATAGGCAGAAACATTGGAGAAGAGGCAAACTAATCAGAGTAACCATAGCAATAAACTCCATTAGGAACCTGTCTGATACTTAACAGGCATATGGAGCAACAGCTCCTGATGCAAAACTACCTGCAGCCCATTCACAAAAGTATAAATGAAGAGAATTCAGGGCAAGGAAGCTGCTCCACCCAACATGACCAGCCCTGCCCAGAAGTCCAGCACAGCCCAGGCAGCTGAAGCTCTGGTGTGCATTTGTTCATTGAGATCAGCATGAGATTTCTAAAGTCTGAAAATGCATCAAAACGAAAACTATTTTCTCTGAATCACACCTTCATCATTACATTTTATATCTTAAATGCAAACTCCACCTGGACTGCATCATCTCTAAATTTAAGCACAAGCCATACACAAGTAACACACTGCCCTGCCAGGCGTTTTTGCTTACTTACACTTGAGGACGACACTGAAAAGTTTGCACTTGACTGCCATACTCAGGGGCCAGCAGTTCTCTGGCACTCCTTCATGCATGCAGCTCCCTTCATGTATTCACTCCAGGTCTGAGGTTTAGGTATTAAACATAGAAGTTACCGAAGAAGCATGCTCTTAACTATTGCTCAGCAAGATTCCCCATGATTTCAGATGTAGCTGTACATATTACTCCGTTTGCTCAGCTCTAAACCCATAACAATAGCATTGCTATCAAAAAGAAGCTAACATTACTGTTACTATTGGAACTATGCAGGTAATTGACATTTCTCTATTGAAACCTAAGAAAAGCATGCGAGCTCTTTGGGAACAGAGCCTGAGCTCCATCAGTGACTACCTCTTCCTGTGTACAG
Seq C2 exon
GTACAGCTGCAACTGCACTGGCACCGGGTTTATGGGCCTGCACTGCGAGAGCCTTGTACCCCCATGCTGGTCACAGCCGTGCTACAACAATGCCACATGTGAGGACAGTGCTGATGGATACACCTGTCACTGCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287:ENSGALT00000003596:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=45.5),PF0764510=EGF_CA=PU(56.8=31.8)
A:
NA
C2:
PF0764510=EGF_CA=PD(40.5=31.2),PF0000822=EGF=PU(81.8=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAACTGCGAGCTGG
R:
GGCCAGCAGTGACAGGTGTAT
Band lengths:
334-1457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]