GgaINT1010432 @ galGal4
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8993754-8994563:+
Coord C1 exon
chr17:8993754-8993936
Coord A exon
chr17:8993937-8994449
Coord C2 exon
chr17:8994450-8994563
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTATATTTTCACTTCAAAGGGG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GTTACACAGGGCAGCATTGTGAAGAGGATGTGAACGAGTGTGCGACAGATCCCTGTCACAATGGAGGTGTATGCTTTGAGCGATCCAACCAGTCTTATTATGGATCACAACCTGACTTCCCCAGCGATTTCAGCTACAGCCAAGCAGCTGGTTTCCTCTGTTGGTGCCAGCCAGGCTTTGCAG
Seq A exon
GTAGGCTTTGTGGTAAATGTTTTCTCCTTTCTGCTACCTATAGACTGTGGTTTGAGTAGATAGGAACGATGGGTGAAATACCACTCACCCTTTCCCCTGGTTTATAAATATCTATAAAAGCATGGATTTAAGAGCTGGGGAAAATGCTTGGAAGGAGCGGCTAACAATAATACTTTATTGTGTTGTTTGTTTGTTTATTTGTTTCTTGTTTTTGAAGAAAAAGATGAGAATTTGGTCCACTTTTGTGCAGCAGTTCTGATTCTGCCACAGTTCCCTTTCCTGACACAGGCAAATCACTTAAGCTTTCCCGGCTTCATTTTGCATAATTGTTTTAATGATAGAATCTATTTATCGGAATGCTAGGAGAGTCATGCACAGTTTACAGAATTCTTCTGTATTTTTAGAAGATAGAAAAGAACTGCAAAACATCATGATTGCAGTTGTCTTTCAGTTTGTATCCTTCGCTGTTGCATGCATGCACTAATGTTGGTAATTTATATTTTCACTTCAAAG
Seq C2 exon
GGGAGACCTGCTTTACTAACATCAATGAGTGCGAGTCTCAGCCATGTCAGAATGGAGGTCACTGCGTGGACCTTGTTGATGGCTTTCTTTGTCATTGTTTACCAGGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=8.1),PF0000822=EGF=PU(94.1=77.4)
A:
NA
C2:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(93.3=71.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGGCAGCATTGTGAAG
R:
CTGAATAACCTGGTAAACAATGACA
Band lengths:
294-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]