GgaINT1010646 @ galGal4
Intron Retention
Gene
ENSGALG00000028288 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]
Coordinates
AADN03017637.1:2282-4167:+
Coord C1 exon
AADN03017637.1:2282-2578
Coord A exon
AADN03017637.1:2579-3405
Coord C2 exon
AADN03017637.1:3406-4167
Length
827 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGCCTCGCTGTCCCCACAGGTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
CTCACCAAGAACGGCACGGTGGAGTCGGAGGAGGCGGAGGGGCTGACGCTGGAGGACATCTCGGACGACGACATCGACGTGGAGAACGTGGAGGTGGACGACTACTTCTTCCTGCAGCCCCTGCCCACCAAGCAGCGGCGGGCGCTGCTCCGCGCCTCCGGCGTGCACCGCATCGACGCCGAGGAGAAGCAGGAGCTGCGCGCCATCCGCCTCTCAAGGGAGGAGTGCGGCTGTGACTGCCGCCTGTACTGCGACCCCGAGGCCTGCGCCTGCAGCCAGGCGGGCATCAAGTGCCAG
Seq A exon
GTGAGTGACGAGTGGCAGAGCGGGAGGGCTGGAAGGGACCTCTGGGGTCCTCCATCCGACCCCCAGGGCAGAGGCACAGCACCGTGGCCGGGCAGGTTTGGATCTCTCCGGAAAGGAGCACCTCCCTGCTCTGCTGGCTGTGTGCTGCAGTGAACTGTTGGCCTTCTTGGCCACCAGGGCACGCTGCTGGCTTGTGGTCAGCCGCTGGCCAACTGGTACAGCGTTGGCCTTCTTGGCCATGAAGGCACACTACTGGCTTGTGGTCAACTGTTGGCCAGCCAGGATGCCATTGGCCTTCTTGGCCACCAGGACACGCTGCTGGTTCATGGTCACTCTGTGGTCAACCGTTGGTCAACAAAGACAGCACTGGTGTTCTTGGCCATGAGGGCACACTGATGGCTTGTGGTCAACTGTTGGCCAACCCTTGGCCAACCAGAAATCCATGGGCATTTTTGGTCACTGGGATAAACTTGCTGGTCCGTGGTCAACCGTTGGCCAACCAGTAGACCGCTGGTGTCCTTGGCCGTGAGGGCACACTGATGGCTTGTGGTCAACCATTGGTCAACCACCGATCAACCATTGGCCAACCAGGATACCATTGCTGTTCTTGGCCACCAGGGCACACTGCAGGCTCATGATCAACTTTTGGTCAACCGTTGGTCAACCTGTTGGCCGCCATTGGTCCTCTTGGCCAGCAGAACACACTGCTGGCTCGCGGTCACCCTGTTGGCCACCGAGACCTTCTGTGTGGAGCTCCTTTCCCACTGGGGGCGCCGCGCCGGGCCGGAGGCAGAGCGCCGCTTCCGGCAGCCTCGCTGTCCCCACAG
Seq C2 exon
GTGGACCGCATGTCCTTCCCCTGCGGCTGCTCGCGGGACGGCTGCGGGAACATGGCCGGCCGCATCGAGTTCAACCCCATCCGCGTGCGGACTCACTACCTCCACACCATCATGAAGCTGGAGCTGGAGAACAAGCGGCAAGGCGCGCGGCCCGGCGACGAGGAGCTGCAGGGCTCGGGCGCTGCGTGGCCCCCCGGCGCGCAGCCCCCCGAGACGCAGGACTTCCAGGAGTTCATGGCCGAGAACGAGACGGCCGTCATGCACCTGCAGACCGCCGAAGAGCTGGAGAGGCTGAAGGCCGAGGAAGACTCCAGCGGCGGCTCCGGCGTGGAGAGCGTCGGCGTCTGCATCCTGGAGGAGCCGCTGGCCGTGCCGGAGGCGCTGTGCCCGGGGTTGGCAGCCCCCATCCTCATCCAAGCGCAGCTGCCGCCGGGGTCCTCCGTGCTGTGCTTCGCCGACGGCGCGGAGCAGCCCGCAGCCACGCAGCCCTACTTGAACGCTGCTCCGCTGCTGTACTACCAGGTGGAGCCGCGCTCCGTGCTGGGCCCCAAGGGCGAGAGCGGTGCTGAGGAGTGCCCAAAGGACACCGGGACCGTCCCCGCAGCCCCCACGGGGCCGTGCAGCCGGGCTGCCCCCGCCCCGAGCAAAGGGGAAGGGGCGAAAGGTGTGGGGCAGGAGGGTGCGCAGAGCTGCGCTGCATCGCTCGGCCCCTCGGCACCCCGTGAGGCACCCGGCTCCGAGCAGCCCCCCCAGGGGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028288:ENSGALT00000043078:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF098174=DUF2352=PD(65.6=63.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACATCGACGTGGAGAAC
R:
GCTTCATGATGGTGTGGAGGT
Band lengths:
349-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]