GgaINT1010889 @ galGal4
Intron Retention
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:38684-39380:-
Coord C1 exon
chr16:39195-39380
Coord A exon
chr16:38854-39194
Coord C2 exon
chr16:38684-38853
Length
341 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
ACACGTGTCCCCTGTCCCAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GGCTGTGCGTCTCCCCCCAGGGACACAGTGTTGGGAGCACTGCTGGGGGGGGACCCCACTGTCCCTATGGGGCCGCTGGGGGGGGACCGCCTGCACATGGCCCTCGTGGATCTCTTCATCGGTGGCACCGAAACGACGGCAGTGGCTCTGCTATGGGCTGTGGCCTTCCTGCTGCACCACCCCCAG
Seq A exon
GTGACACCACATCACATCTGTGTCACACCCACACCTGCTTCTCCCCAGGTCCCATTCGGGTCTCCCAGCCCCATGTATCCCCAGGGCCTCCCCACCCATGTCCTGGCTGTCCCCTCCCATAGCTCCACTGCACTTCCCCATATGCATGTCACATCCATGTCCATAACCCTGTGTGCATAATGCCCCTGGTGTCCCCTGCACTGTGGCCAGTGCCAAAATGTCACGCTCATGTCACTTCCGTGTCACGCTGCTGTCTGTGTCCCCGTGCAGGGGAGGGCCACCCCACAAGTGACCCGATGTGGCACTTGGTGACGTGCTTTGACACGTGTCCCCTGTCCCAG
Seq C2 exon
GTGCAGGACCAGGTACGTGCAGAGCTGCGCCAGGTGCTGGGCCCCAGGGGGACCCCAAAGCCAGGGGATATGGGGCGACTGCCACTGCTCCGTGCCACTGTCACCGAGACCCTCCGCCTGCGACCCCCTGCGCCCCTCGCGCTGCCCCACTGTGCCCGGCGCCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153:ENSGALT00000016503:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.351
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.9=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGACACAGTGTTGGGAG
R:
GCGGAGGGTCTCGGTGAC
Band lengths:
287-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]