GgaINT1011118 @ galGal4
Intron Retention
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18294374-18294762:+
Coord C1 exon
chr11:18294374-18294538
Coord A exon
chr11:18294539-18294634
Coord C2 exon
chr11:18294635-18294762
Length
96 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
3' ss Seq
CAATGTGTGCCTTACCGCAGGAG
3' ss Score
7.59
Exon sequences
Seq C1 exon
GGTGCTACTATCGGTGCCACAGCAAGTGCCTGCCCCTGGTCACCAAGCCCTGCGTCAGGTCCAAGGTGAGCCACCAGGCCGAGTACCAGCTCAGCATCTGCCCTGAGAGCGGGCTGGACAGCCAGGACTACCGCTGTGCCGAGTGCCGGGCCCCCATCGCCCTCA
Seq A exon
GTAAGGCACCGAGGGCTGTGGCTGGGGGGGATCTGGGAGGTGCATGGGGCTGGGGGTGTTTTTGGGGTGCCGGTACCAATGTGTGCCTTACCGCAG
Seq C2 exon
GAGGGGTGCCCAGTGAGGCCCGACAGTGTGACTACACCGGCCTCTACTACTGCAGCAGCTGTCACTGGAATGACCTGGCTGTCGTCCCCGCCCGCGCCATCCACAACTGGGACTTCGAGCCCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712:ENSGALT00000044355:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.0=35.7)
A:
NA
C2:
PF139011=DUF4206=PU(47.3=81.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACCAGCTCAGCATCTGC
R:
GACAGCCAGGTCATTCCAGTG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]