GgaINT1011119 @ galGal4
Intron Retention
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18294635-18295113:+
Coord C1 exon
chr11:18294635-18294762
Coord A exon
chr11:18294763-18294999
Coord C2 exon
chr11:18295000-18295113
Length
237 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
TGACAGCGCTGTATGTGCAGGTG
3' ss Score
4.99
Exon sequences
Seq C1 exon
GAGGGGTGCCCAGTGAGGCCCGACAGTGTGACTACACCGGCCTCTACTACTGCAGCAGCTGTCACTGGAATGACCTGGCTGTCGTCCCCGCCCGCGCCATCCACAACTGGGACTTCGAGCCCCGCAAG
Seq A exon
GTGCCTGCGGTACTGGTGGGGGGCGCGGGGGTCTCAGGGATCACTTAGGAGGCTGTGTCCCCAAACAGGGGCCCTTGGGGACCGTGTCCCTGGCTGGAAGACACTTGCAGGGCTGTGCCTCCAGCTACGGGGTCTCTTGGAGCCAGGGCCGTGGGGCTAGGAGTGGAGCAGAGGGCTCAGCCTGTGCCCTGCGCAGCCCTGCTGGCCCTGCACAGCGTGACAGCGCTGTATGTGCAG
Seq C2 exon
GTGTCCCGCTGCAGCATGCGGTACCTGGCGCTGATGGTGTCGCGGCCCGTGCTGAAGCTGCGGGAGATCAACCCTCTGCTCTTCAACTACGTGGAGGAGCTGGTGGAGATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712:ENSGALT00000044355:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(47.3=81.4)
A:
NA
C2:
PF139011=DUF4206=FE(50.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCCCGACAGTGTGACTA
R:
CGGATCTCCACCAGCTCCTC
Band lengths:
228-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]