GgaINT1011408 @ galGal4
Intron Retention
Gene
ENSGALG00000027677 | DLX3
Description
distal-less homeobox 3 [Source:RefSeq peptide;Acc:NP_990135]
Coordinates
chr27:2989225-2990825:+
Coord C1 exon
chr27:2989225-2989848
Coord A exon
chr27:2989849-2990634
Coord C2 exon
chr27:2990635-2990825
Length
786 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCCTCCCGCTCTGTGCTCAGTGT
3' ss Score
10
Exon sequences
Seq C1 exon
TCCTTCACCCCCTCTTGTTGTTTCTTGAGAGAGAGAGAGGGGAGGGAAAGAAAAGAAAAAAAAAAGGAGAAGAGAAGCCAAACCCCAAAGCAGGAGGCAGGAGCCTGTTTTGCCTCCCAGGCAATATTTCTGGAGCCAATCGGAATGCGCACCCACCCTGCCCCGCTCCCTAATTAAAGGCTTTGGAGCAGGGCCGCCCGCAGCTCTGGGCGCGCACTCCGGGTCGCCTCTCAGCGGGAGCGCATCGGGGTACGTTGTGGGCAGCGGGGGGTCCCGGGCGGGCGGCAGCCCCCCGAGCGGCAGCGATGAGCGGCTCCTTCGACAAGAAGCTCTCCAGCATCCTCACCGACCTGTCGGGCTCGCTGAGCTGCCATGCCTCCTCCAAGGACTCCCCGACGCTGCCCGAGTCCTCCGTCACCGACCTGGGCTATTACAGCGGCCAGCACGACTACTACCCGGGCCAGTCCTACGGGCAGCCCGTCGCCCACTACCCCTACCCCCAATTCAACCTCAACGCCATCGGTGCCGGCGGAACCTATTCCCCCAAATCCGACTATTCCTACAGCCCGTCCTACCGTCAGTACGGCCACTTCAGGGACCAGCAGCTCCCGGCGCAGGACGCAG
Seq A exon
GTATGGGGCCGTGGGGTGGGCGCTCCGTTGGTTCCCCACTGCGTGGGAGAAGCTGTGACCCCCAACCCCCCCATCTCGGTGACGGAGGCTGAGGACGGCGGGTGGGGGGCTGATGGAACCCCCGTGAATCCCAATGAGCCGTCATAGGGAACGCTGTAGGGATCGCAGTTGGCTGTCGTGAGGATCCCAATACGGTGTTATGGGGTTCCCGACTTCTTGCCGGAGGGATCCCGGTAGATTTCTGTAGGGAATCCCAATGTGTTGTTGTAGGGATCGTCGTAGGGATCCCAACTTGTTGTTGTTGTAGGGTTCCCGGTGCGTTGTAGGGTTTCCAGCGCGTTGTAGTGACCCCAATGCATTTCTGTAGTGACTCCAATGCGTTTTTGTACTGACCCCAAAGCATTTCTGCAGTGACCCCAAAGCATTTCTGCAGTGACCCCAACCTATTTTTGTGGCGATCCCAATGTATTTCCATAGGGATCCCAATACATTTCCATACGGATCCCGGCGTATTTTTGTAGGGTTCCTAATGCGCTGTCATAGGGAACCCCAACGTACTGCTATAGGAATCTCAATGTATCGTCATAGGGACGTATTTTTATAGCAAATCCCAACGTGTTTCCATAGGGATCCCAACGCACTGCTCCCCACTAAGGGTTTAGGGCCGTCTCTGCCCCGCTTCGCTGCTGCGCAATGGGGCGACCCGGTTTGCCGCGGGGTCGGGGGGGCCGCGTGGGGGGGGACCCTTTTGCCGACCCCATCCTCACCCTCCCGCTCTGTGCTCAG
Seq C2 exon
TGTCGGTGAAGGAAGAGCCGGAGCCCGAGGTGCGGATGGTCAACGGGAAACCCAAGAAGATCCGCAAACCCCGCACCATCTACTCCAGTTACCAACTGGCCGCCCTGCAGCGCCGCTTCCAGAAAGCCCAATACCTGGCGCTGCCCGAACGCGCCGAGCTGGCGGCACAGCTGGGGCTCACCCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027677:ENSGALT00000044914:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.8)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=65.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGACCTGGGCTATTACA
R:
CCAGGTATTGGGCTTTCTGGA
Band lengths:
348-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]