GgaINT1011520 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10087683-10088513:+
Coord C1 exon
chr18:10087683-10087949
Coord A exon
chr18:10087950-10088351
Coord C2 exon
chr18:10088352-10088513
Length
402 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ACCAGCACTGCCTGTTCCAGGTG
3' ss Score
7.55
Exon sequences
Seq C1 exon
CTGGACCTCGCCTCGCAGTACATCAAGGCAGCCGTAAAGAACGTTCCTACAGTGTTCCTGATGACGGACTCCCAGGTGGCGGAGGAGTCGTTCTTGGTCCTGATCAATGACTTCTTGGCATCCGGGGAGGTGCCGGGGCTTTTCCAGGATGATGAATTGGAAAACATTATCAGTGCCATGAGGCCACACTTGAAGTTCCTCGGATTGCCAGACTCAAGGGAAAACTGCTGGAAATTATTTATAGAGAAGGTCAGGCGTCAGCTGAAG
Seq A exon
GTAGGTGTGCGCCCGGGAGTGGTGTTTGTGAGGGCTTCTGACGTCTTTAATCCAAAGTCTGTTCACAAACATGATGCAGACTGCTGCGGTTTCGTTCTGCTGTGATGAGTGTGAGCAAAAGGTGTGTTCAAAGGATCCCCAGCGCCTCGTGCCCTGAGGCCCAGAGGTGCAGCTGCTGACACCCACGGGTTTCCCTCTTGAGCGGAGGGCTGCGTGCATGCAGCCCCCTGGCTGTGGCCAAAGGGAGCTGGGGCTGGCCTGTCCCCACCAAGCAGAGCAGGGCACACCACTGCCAGCCATCCCTGGGCACAGGGACGGGACTTCAGTGGGTGAGAGGAGAAGTCTCTGCATGCAGCGGTGGGGACGAGCAGCCACCGCTCTCACCAGCACTGCCTGTTCCAG
Seq C2 exon
GTGATCCTGTGCTTCTCCCCCGTGGGCTCCACTCTGCGCGTGCGGGCAAGGAGGTTCCCTGCCATAGTCAACTGCACAGCCATCGACTGGTTCCATGAGTGGCCAGAGGACGCCCTGGTGTCTGTCAGCAGCAGGTTCCTGGAGGAGACGGGGGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(32.8=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCAGTACATCAAGGCAG
R:
CGATGGCTGTGCAGTTGACTA
Band lengths:
342-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]