GgaINT1011541 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10093965-10094660:+
Coord C1 exon
chr18:10093965-10094192
Coord A exon
chr18:10094193-10094468
Coord C2 exon
chr18:10094469-10094660
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TCACTGCCGTTCCCCTGCAGGAC
3' ss Score
11.75
Exon sequences
Seq C1 exon
AACATCCACCTGGTGGCCCGCTGGCTGGGCACGCTGGAGAAGCGCATGGAGAGGCACAGCACAGACAGCCACCCCGACTACCGCGTGTTCATGAGCGCCGAGCCGGCCCCCAGCCCCGAGGCACACATCATCCCACAGGGGCTGCTGGAAAATGCCATTAAGATCACCAACGAGCCGCCCACTGGCATGCATGCCAACCTGCACAAAGCCCTCGACCTCTTCTCCCAG
Seq A exon
GTACCCGCACTGCTTCCCTGCACTGCTCCCTCCCTCTGAGCAGCCTCACATACAAGGAATCATAGGAGCACATATAGATCCTAAGTGTTTTAATGAACAAAGGAGGGCAATGGTTAACCACCCAAAAAGCCTTTTAAAGATGGAATTAGATGTGGGTTTGCTTCTTTATTTTAAATACATACTCCTCAATTCCCCTTTGCCGTCACTCACGGTCAGATGGGATGGCAACCTCCGTTCTTCACTTGCCAGCCCCCTCTCACTGCCGTTCCCCTGCAG
Seq C2 exon
GACACGCTGGAGATGTGCAGCAAAGAGATTGAGTTCAAGTGCATCCTGTTTGCACTCTGCTACTTCCACGCCGTGGTGGCAGAAAGGCGCAAGTTTGGTGCCCAGGGCTGGAACCGCTCCTACCCCTTCAACAACGGGGACCTGACCATCTCCATTAATGTCCTGTACAATTACCTGGAGGCCAATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCACACATCATCCCACAG
R:
TGGGATTGGCCTCCAGGTAAT
Band lengths:
301-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]