GgaINT1011548 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15044721-15045881:-
Coord C1 exon
chr14:15045789-15045881
Coord A exon
chr14:15044814-15045788
Coord C2 exon
chr14:15044721-15044813
Length
975 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTTCTCTGCAATTGCAAAAGGAC
3' ss Score
3.44
Exon sequences
Seq C1 exon
TGCATGTACTGATCTGAGGAGGAGGGGGACCAAAAAATTTTCAGGAACCAAAGCAGAGATGAAAGACAAAGCAGAATGAAGCCAACACAGAGG
Seq A exon
GTGAGTTCTTTCTGCAGGGACTATGGACGATTCATGAGATCTACAGATTGTCTGTTTCTTTTGTCTTATGGTACATCACTGAGAATGACTCTTTTTGAAGAGGCTTGTTCCGCGTTCTTTGGACATTTTAGCTCTATAATGTACTGTTTATTAAGAATTCTGTTAATCAAGTATTTGAGAAGTATTAACTCTTCACAGAGTTATAAAACTAACCCAAGGGCTGTGTTAGAATGAGCAGTTGCTTTCTTAAGGACTCTTATATCTTCATGAATGAACGACTGTCCCAGCAAACTGCTCAGCTCATTCTCACCCAAAGGCCCAATACTTTTGTCATTAATCAAGAAAAGCTCATGCTGTCTGTAGCAAGATATGCCTGGCAGTGGTAACTTCTTGATTCTGGGTGTCTGCGTGTGGGCACACTGTGGGTGCCGGGGAGGTCAGTCAGATCAGTCATTTCCCAAAATGATGTTGAAGAGGTCACAGTTTTGTTTGCTTGAGTGCCAGCTTTGGGCAGCCAGGATTCCCAGTCCTACATGAAAACTGCCTCTTGCTCTAAGGATGTATTTGAAGTTACGTGTAAATAATGTATAATCCTTTTGTACATAATTGTGCAGGGTAATAACTGGGTGTTTTATGGCAATTTAATGCACTGGCGTTCTGATACCACATACTTTCACCTTCTTTTTTTCTGGTAATCTCACTGTGTATTTGGGAATTTGTTTCTTGTGAATCTCCTGAGCAAATATGGCTTAGGAAGGTCAGAAGGACTGGGGGTGTCTGCTTATGTTAAGGAAAAATGCTGTTCAGAAATACCCGACAACATCACGGGACTGAATAATTTTGACAAAATATCGTTAGAGAACCTTCTGTGGTGCCCTGGAAGGCAACGTGTCATTTTCAATCACTCTTTTTCAAAATGGTGTAACTCATAGCTATCTTCAGAAAGTCTTTGTCATTTCTCTGCAATTGCAAAAG
Seq C2 exon
GACTCAGTGAATGACAGGAGCCGTGTGAGGCAATTACCAGAGGTGCCCCCCATCCCTGCTTCTGCTGCAGCTGCACCTTCGGAGTTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]