GgaINT1011648 @ galGal4
Intron Retention
Gene
ENSGALG00000026008 | DNM2
Description
dynamin 2 [Source:HGNC Symbol;Acc:HGNC:2974]
Coordinates
JH375595.1:10696-11207:-
Coord C1 exon
JH375595.1:11161-11207
Coord A exon
JH375595.1:11045-11160
Coord C2 exon
JH375595.1:10696-11044
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGCACCT
5' ss Score
0.41
3' ss Seq
GGGCTCTGCTGGGCTCTGCTGGG
3' ss Score
-25.25
Exon sequences
Seq C1 exon
GGCTCTGCTGGGTGCTGGACGCTGTGCTGGATGCCGGGCTGTGCCAG
Seq A exon
GCACCTTGCTGGACTCTTCTGTGCTCTGCTGGGTGCTGGACGCTGTGTTGTGTGCTGGGCTCTGCTGGGCTCTGCTGGGCTCTGCTGGGCTCTGCTGGGCTCTGCTGGGCTCTGCT
Seq C2 exon
GGGCTCTGCTGGGCTCTGCTGGGTGCCGGGCTGTGCCGTGCCGTGCCGGGCTCTGCTGGGTGCCGCCCCGGGCGCTTCCTTGGCTCTCAGACCCGCCGGCCCGGTTGTGCAGGAAGCACCGAGCGGTGCGTGCCGGGGGCGGTGCCGGGGGCGGTGCCGGGGGTGACGCCGGGGTTGCTCCGTGCCGCGGGGCCGTGCGGTGCCGCTCCTCCTCGTAAAGCCGCGGTGCGATCGCTGCTCCCGTCCCGTCCCGACGCGTCTTTCCATCCCCGCAGGGATTTCCTGCCCCGCGGCTCCGGCATCGTCACCCGGCGGCCGCTCATCCTGCAGCTCATCTTCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026008:ENSGALT00000044448:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0035018=Dynamin_N=PU(16.8=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCTGTGCTGGATG
R:
CTTTACGAGGAGGAGCGGCA
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]