GgaINT1013741 @ galGal4
Intron Retention
Gene
ENSGALG00000027313 | GCK
Description
glucokinase (hexokinase 4) [Source:HGNC Symbol;Acc:HGNC:4195]
Coordinates
AADN03010888.1:5926-6958:+
Coord C1 exon
AADN03010888.1:5926-6080
Coord A exon
AADN03010888.1:6081-6838
Coord C2 exon
AADN03010888.1:6839-6958
Length
758 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GTCCCTCCTGCCATCCCCAGCTC
3' ss Score
8.54
Exon sequences
Seq C1 exon
AGGTCGGGGATTTCCTCTCGCTGGATCTGGGCGGCACCAACTTCCGCGTGATGCTGGTGAAGGTGGGTGAGGGCGAGGAGGGGCAGTGGAAGGTGAAGACGAAGCACCAGATGTACTCCATCCCCGAGGACGCCATGACGGGGACGGCCGAGATG
Seq A exon
GTGAGCGGGGGACGAAGGGGTCCTCACTGCAGATGGAGGAGAGGCGTCCCCTCTGTGGTGTCCGGTCTGGGGCCAGCGCGGCTCTGGGGATGGGGAGGTGGGGATGTGGTGGCAGTGGGGATGGGGTGGTGGGGTCAGCGTGGCTCTGGGGATGGGGTGGTGGGGACACAGTGGCTCTGGGGATGGGGTGGTGGGGTCAGTGTGGCTCTGGGGATGGGGTGACAGGGACATGGTGGCAGTGGGGATGGGGTGATGGGGTCAGCATGGCTCTGGGGATGGGGTGGTGAGGACGTGGTGGCTCTGGGGATGGGGTGATTGGGACATGGTGGCTCTGGGGATGTGGTGGTGGGGACACAGTGGCAGTGGGGATGGGGTGATGGGGTCAGTGTGGCTCTGGGGATGGGGTGGTGGGGATGTGGTGGCAGTGGGGATGGAGTGATGGGGTCAGTGTGGCTCTGGGGATGGGGTGGTGGGGATGTGGTGATGCTTGGGACAGACAGGCTGGCAGGGACGTGGTGATGAAGGGAATGAGGATACTGGGATGTAGTGGCAGTAGGGATGAGGTGACACTGATGACAGGGATGTGGTGGCTCTGGGGCAGGGCAGCGGGGACACGGCAGTGCTGGTGGCTGTGGCAGGGATGTGGCAGCACTGGGGACGGAGCGGTGCGGGGATGGTGGTGCTGGGGATGGGGTGGTGGGGCCACAGCAGGACCGTGGATGGGGACACTGCGGTGACGTCCCTCCTGCCATCCCCAG
Seq C2 exon
CTCTTCGACTACATCTCGGAGTGCATCTCCGACTTCCTGGACAAGCACCAGATGAAGCACAAAAAGCTGCCCCTGGGCTTCACCTTCTCCTTCCCCGTGCGGCACGAGGACATCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027313:ENSGALT00000045953:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.5=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGGGGATTTCCTCTCG
R:
CGATGTCCTCGTGCCGCA
Band lengths:
270-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]