GgaINT1013769 @ galGal4
Intron Retention
Gene
ENSGALG00000005940 | GFI1
Description
growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
Coordinates
chr8:13080737-13081123:+
Coord C1 exon
chr8:13080737-13080800
Coord A exon
chr8:13080801-13080916
Coord C2 exon
chr8:13080917-13081123
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCGCCTCCTGCTCCCCGCAGACA
3' ss Score
11.27
Exon sequences
Seq C1 exon
CCCCGCTCCGCCGACGAGGACTACAGCCTGCGGCTGGAGACGGTGCTGGCCCAGATCTGCGCAG
Seq A exon
GTAGGAGCTCGCCCTTAGCGGGGCGGCCCCGGAGCCCAGCAGCGGGCGCGGGGCAGGAGGGGAAGGGGTGTCCGGCCGGGCACCGCTGAGCTCCTCTCGCCTCCTGCTCCCCGCAG
Seq C2 exon
ACAGCAAGATCCCCGAGGGCGCGGGGCTGTGCCGCACCGTCCTGCCGGACCCGGAGCCGTCGCAGGGGCGCTTCTCCCCGGAGTCCCACCTCACCGAGGCTGCCGATGGCACCTCCGAGTCGGCGCCCAGCTGCGAAGGCAGCATCTGCGACAGGGTGTCTGAGTTCGGAGATTTCTGGAGACCGCCCTCGCCCTCCGTCTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940:ENSGALT00000009558:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGAGGACTACAGCCTG
R:
AGGGCGGTCTCCAGAAATCTC
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]