GgaINT1013950 @ galGal4
Intron Retention
Gene
ENSGALG00000026345 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
JH376279.1:70611-76969:+
Coord C1 exon
JH376279.1:70611-71379
Coord A exon
JH376279.1:71380-76875
Coord C2 exon
JH376279.1:76876-76969
Length
5496 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TATTTCTTCCCCATTCCCAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
TCTGTAAACCCCAAAGAAACATTTTCCATTTCCAATCTCGTCGTTAGAACACTGCTGCATTGAAGGCAAACTGAACCCATTTTGAACAATCCATTAATGAGGAGTCTGGGGGAATGGCTCACTGAGGACCCGTTCCCACCAACTTCTTGCCACCCACACATCCCAGTCCCATTACCCCCAGCTTTTCAGGACCCACAGTCCCATGGAGAAGACCCAGAATCTCAAAATTCTTTCCGTGTAGAGTGAAATTCAACAACGACAACAGAGTGGAAGTTTGGTGTCTGGTAGGCAGGAGTGCTGGTGCTCTACAGGCATTAAAACCACAGGAACAAAAGGGGTTCACCTCTTCTCTCCTCCTTTTGAACCTGAAGATCGGTACGTTTAGAAACACGGCTTTTCCCCAGGAAAACGAGGCTTTCCATGGGTATAAAAAGTGCAGAATTGCTGCTGCACTGAAACCAGAGGGCTCTGCAATGGTTCCTTCCCACCAGCACCAGTTATGCAAATTGCACAGTGAAGCAGACGCACACCACCGACCATTTCCTTACACAGAAGCGAACTGCAGGAAGTCCATGGGCTGCATTCACCGACACTTCTGCTGCCATCTCAAGCAGCTCTCACGGGATGGGGTCACTTCCCAACGTCTGATCCAACCCCCAAATCCCCTTTTGCTCAATCCAGCTGTGATTCAGAGTCGGATTGCTTGGGATTCTGCTGCTTTCAGACCAAAAAACTGAGGATTCGGCCATGGGAGACCCGGAGCAAAGTG
Seq A exon
GTATGTGATGGCATCAGAACCTTTTGTCGTCTTTATGAGTATTTTGTGGGGCAGGAGATGACAGGAGAGTCGCCTTGCAGATCTGGGTGCCAATGCAACCCATTGGGGTTTCCATCAAGATCCAGGTCGCCCTGATCTCATTGAATTCTCATTGGATTCCATTGAATTTTTCTTGAATTTCACTGAACTCTCATTGAATTCTCATTGAATTTCATTGAATTCTCACTGAATTTTCTCTGACGTGGCATTATTTGATGCACTGGGACTGGACATTCTCTTAGGTAAGAGGAAAGGGAGCAGACCACATTTTTGGGGAGGCAGGAGGCGTTCTCTCAGTGTTGGCACTTTGCACACTTCCGGTCGGGTCCATCCGACCAAAAACTGTGATAAAGCCCAAATTAATATCCATTAGGCTATCACCTATAGAACAGAATCAGCATGACTGAATAACACTCTTTTTTTTTCATGGCGTCTGCACACAAAGCTCCTGTTGGGCACCCTCCTCTTGGGTCCCTCTCTGCTTTTTTTGAGGCACTTTTCCAGCCTGGAGGAATGACATCTGCAATTAATTTGCAGGCATTAGGCTGCTTGCTGCCCTTTCTGAGGCCAATTGCACGCTAATTAATGGCATTCTGCCTTCATTATTGGTGTACGATCATTATCTTGCCAAGCACTCCACCACGATGCAGGCTGATTGCTTATTAAATTCATTATGACCCTGTGACTCTAAAGCCACCAAAGAGTGGTGTCTGGGACCTCTAGAAGCAACCCCGTACATGGATCAATTAGCAATCACATCTGTTGGCTTATTAGCCACCCCGTTTGTGGATTAATTGATTATCTCTGATTTAAGCTGTGTTTTTAGGTTTCTTAGTGAAACTTCTAAAATCGGACCAAGAATCCCATCCTTTGCCTTCGGAACATCCCACTGGGCCATACCCACAGAGTTCCTCCCACCAACAGAACCTCACATATCAGGGTTGGTTTTCAGCCATTCTACAAAGCAACAAAGTTCTGTGTGTGAATTATTTTCCTCATCCCTATATTTTTTTGGCCAACGAGGGTCTTTGATTCATCCCTCCGTGACCAGTAGAGGAGCATTTTCAATTCACACACTTTTATTTTAATGAGGTGAAATGGTGTCGTAAGTGGAAATTCTCATCTCACCCCCTCGACACGTCTCATTACCCCCTCATTAATGCACAATCTATTTATGACTTCTGACTTTGCTATTATTTCCTGTCCACTGGGAGCTGTTAATTAGCATCTCTGACCTCCTCAGTGATGAACTGATTTATAAATTCATTTTTTCACTATTTTTCTTTTTTTTTCCCCCACTAAAGTGGGCAGAGAATACAAGAAATCAGAGCGACGGATGGGAAGCGGTGTTGGTTTTACAGCAGCACTGGTGAGGAACTCGGATGATTCTGAGCTGGGCAGGGAGATGCTGAGCAAGGCACAATTAGGCACAGTCATAATGACACAGCCTCACTACAGGGGGAGGATCTCACATAGGAGCAGCGCTGACAATTCAGGTTTCCAGAGGCTTTTCTCTTGGCCTCTTTTTTTTTTCTTTTTTACCAAAAAGTTGGCAGAAAGTGGATTTTCTACATCTGCTGCTGAGATGCGTTGAGCCCTGATATGCAGAACCAGCTTTGCCCTGGCGGAAAAGCTTCAGATATTGCATTGCAAAGTGCAAAACTGAGTGCAGAGAAGAGGAAGGCGCTGCCAGGAAATCTCGCGGTAGAGCTGTGATACCGAAATCCACCGGTGGTGCTGAACTGAGGGTTTGGGGCAGTTATCTCATGGCCCGGCTGAAAGGGAAGTGATGCTTCTGTTGAACTGCAGAACAAGGGCTGCTAAAAATACTGTGATGTTTTTATAGGACGTTGCAGCTTCCTTCGGGCCCCTTCGTGTTGGTACGGGTGGGATTGCTGCCCTTGGTTCAGAATTGCTGAGTGATAGAGATGAGGAGGAGAAATTAAACCAAAATCACCCTCAGAGATGCAGAATTGAGAATATAGGGTGGATTGGGTTGGAAAGGACCAACCGAAAGGTGATACCAAAAGGCATCACCTCGTTCCAACACCCCCTGCCATGCAAATTGACTTAATTTGCTTTGCTCGCATCTGCAACCCAACCTCAAGGCTGGGAGAGCTCAAAGCCAACCTGAAGGATCCCGTGATTCTATGGGCATGGTGGGGATGGGTTGGCAGTTGGACTTGGTGGTCTGAGTGGCCTTTCCAACCTTTATGACTCTGTGATTCTAAAATCCTGCCCCCAGATGTGTTTAATGGTTGGACTTGAGGTCATTTCCAACCTTAATGGTTCCATGATTTAATAGTTCTGTGGGTGGGGATGGGTTGTTGGTTGGACTGATGATCTTGCAGGTTTCTTCCAACCTCAATGATTCTACAGTTCTATTTAAGGTCATGATTGAGTGGGAACGGTGGTGATGGGTCAGTGGCTGGACTTGATCTTGGAGGTCATTTCCAACACCAATGATTCTATTATTCCGAAATCCCGCCCCAAAAATGTGCTGGTGGTTGGATTTGATGTTCTTGGAGGTCTTTTCCAACTGTAATGATTCCATAATTCATGGAATGGCGATGGGTTAACGGATAGACCTGATGCCCTTGGAGGACTATGAAAAAAGTCAAGATTCTAAGAAAAAAATTGTTTAAATGAGAACGGCACAATGATTAATACTCTCAATTTTATGAATTTCTCAGACCACCTTCTTGCTTTAAGAGCAGTCTTAAAGGTGCTTGGGCAGACCCCACTTCCTTATTGAGGCCATCACATTCGCCTTCTCTACCTTGCTGCTTCCATGGGACACCATGTAGTGTTATTTTACTTCGGATTAAAGGAAGGGTTGATGAGAAGGCTGAGGCTGTTGATTCTCTGCTGTACAAGAGCTGCTTTCGAAATGTTTCACGCTCCCCATTGCCAGCACTGCTGGGTTGAGTCACTCCTTCCTGTTGTATAATCCCCCACTGGTGGTAAACAAGAGAAATTAAAGACATCTGTTCAAGCGAACAGTGAAAGACATGAGGCTTCCAATTAAACTATTAAGTTCAGATTTATGTCTTGGATTATGAACAGTTGGTATTTATATTCAAAAGAAGAACAAAGAGAATTTTGGTAGACTCCCCCCCCCTGCCCCGAGCAGGAGGTGGGGACGTTGATTTACCCCTGTGAGGTGTTGGGTGCAGTTTGTGGCTCTGTTGGTGCTTTTATGGCCAAAAATGAGCATCTTCGCCCCATTTTGCACTCCCATTTCTTTTGGGATGAAAGCACGTAAAGAAATAAAGCTGAAATGTGGATGATTTGCTCAGTAAGGCAGAGGCAAATCAGTCAGGAGTTGGTTGGGAGCACTCCCATGTGCAAATCCGAGGATGTTAAATTTAATAAGGAAGGAATTCTCACTGATGTGCTGCTAGAAAATATCTGATGTGTTAAGAGGCACTTTTTTTGGGGCAGGATAGTCTCATTTGGCATTTTTGTTCTACATGATCATAACTGCCCTCAGAAGACAGAGATGTATTGAGGCTGTAATATAAGCTGCAATTAATTAATGTTGATTGAGAAGCTTTTTATAGGCACTGATGCTCATCTTGGGGCAAGAAAGCAAGAAAACAGATGCACTGTTTGCCAATACCACAACAAAAAAGTGCTTCCAGAGGACCCAAATCACTGGGAACGATACCAGCGGAATTTCAGGGCCTTGTTTGAGGAAAAACTGCTCTTCTTTGCACAACCAGATTCAATGTGTGGAGTCCACAAAAGAAAGAATGAATGAATTCAGGAACGAAATGTCTGAAAAAGAGGGCGGTGGGACACAGGAGAATATTCCCACAACCCCCTGTGTGTTCCTACCCATGAGAGTGGCAAACCTCAGATGTGCAGCTGTTGGATCCTCAATGCCAAAAGGCGCTGACAGTCCCTCACTGCTGACACAGAAAAAAACACAATTTTTTGCTTTTTCTGCACCATCAGAATGACATTTGTGAGAGGAACGCAACGACAAGTGAAGCAACTTTAGGCTGAGGTCAACCACATCCTGCTTCCTGGGATGTTGAAAGGACAAAAAAGAGTGAAGCTTTCTTTTGTTTGTTTTTCACCACCACTGCCCGTTTCTATATTTTAAAGTGTTTTTTGTTCTGTGGTTTTTTTTACCCTTTTTTACAGCAGCTTTCAGCCCATGCAGAGTTTTACGTCTGCCCTCAGTGACCAATTAGCAGCGTTAATTACCACATGTGGTCACCTGCTCCATGCACGGGCTCAAGCATAGTATGCTGAGAGCTTACAAAGGTCTATGGGAGGAACCCGCTGCCCCTCGTGGAGGGATGAGCCCATTCTCCATTTCATGTGCCCCCCAGAACTGCCCCCCTTGTGGCAGAAATGCAGATCCTCACCACAAATCAGACTGAGGAACCTCCACGCACAGTGATGCACATGTGATGCATGAGGAAGAGGCAACTTCTGCACTGAAGTTGACTGTTGGGCTGCCAACACTTCTGCTGTTCAGTCCTGTGCATTCAGTTCTGTTTTGCTTTCTGTGTGTGCAGAGCAGGTTTTTGTACCCCATGAGCTCCTCCATCAGGTCTCCCGGTGCATTGTCAGCACTGAACAAAGGGCAGAGAATCATAGAATCGCAGTAACATGGAATGTGTTGGGTAGGAAGGGTCCTGAAAGATCACAGAACCATGGAGTGAGTTGGGCTGGAAAGGTCCTGAAAGATCATAGAACCATGGAATGGGCTGAGTTGGGAGGGACCTTGAAAATCACAGAAACAGAGAATAGTTGGGTTGGGTTTGGGTTCGGAGGAGTCTTGAAGGTCACAGATCCAGGGAATCACAGCGCTGTAGGGTTGGAAGGGTACTTCAAGATCACAAAGCTTTGTTGAACCTCATTAGGTTCTCATGTGTCCACTTTCTGCTTCTGTCTGGGATGGATCTCTTCCTTCCTTTGTGCCAATTGCACTGCTCAGCTCAGTGCCAGCACCAAACTGCTGAGGGTGCGCTGATCCCATCATCTGTGTCATGGATAATGGTGTTGAAATCCCAGATGGACCCGAGGGGACACCACCTCTGTCCCACTTCCACCGGGACACGGAGCCATTGACCCCATTGGCTGTATTATGGGCACACCATGACTTCACCCCATAGCGCTGCCACAAAGCTTTCTGCACAGTTTTCACAACTGATGGGTCTGCTTGGAAGCCCTAAAGCAGCACAGATGTCTCCTGTTGATATCCACCCGCTCATCTTCCATCATCCAAGGAACCCTGGGAAATGTATTACTCTGTGTTTTCTTGCAAATCCCATTTCATGTTGGGCATCACCTGGCTGTGCCTCACCGGGACATCGTAATTTGTCACATCCTCATGATAGAGTGGAGCTCAACCACATTCCTCTGCACCTCCAGAAACCATTCTGTAGACCTCAAAGGAGCTCTTGGCCTTCTGTGAAATTATTTCTTCCCCATTCCCAG
Seq C2 exon
GTCTCGACCATCAAGAAAGGGCACCTGAAAACAAGAAGCGCTACAGTGAGATATTCCGCAGCCTGGATGCCATAGAAATCTCAATTGGAAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026345:ENSGALT00000046009:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]