GgaINT1013951 @ galGal4
Intron Retention
Gene
ENSGALG00000026345 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
JH376279.1:80546-81459:+
Coord C1 exon
JH376279.1:80546-80683
Coord A exon
JH376279.1:80684-81268
Coord C2 exon
JH376279.1:81269-81459
Length
585 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
TCCCTCCTTTCTCCAACAAGGTC
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTTCAGGAAGCAGAAGCTTTGTACAGGATGTGCATCGGCGATGCCAACTTTCGGCGACAGGAACTGGAGAAGGTGCGGGCGCGGATCGTCTCCCACATTCGGAAGCTCATTTACCAAGGAGATGAGGTGCTGACGTGG
Seq A exon
GTACGTCTCCTAATTTCTCCTTCAATCCTCATTTCAGAAAAAGCACTCTCTGGGTTAAGACCTTGAGGCTCTTCTGTGTTTTACCGTGGAACTTCCCTTTGTTTGGGCATTCTCCAGCAGGTGAAATTAGAGAGCAATCTGGACTACCTGTTGGCTTGAAATATATACAGTTATTGCTGCTTGGAGGGCAGATATCCATAGAAAAAAACTAGGAAAACAAAGAGTAACAAATGATTTCCATGCCCCCCTCCCCCATTCCCCTTCTTAGAAGAGAATGATAGCATTAAGCAGAAGTATCATGGAATGGGTTGGGATGGAAGAGACCTTAAAGATCGTAGAACCATGGAGTGGGTTGGGTTGGAAGGGTCCTTAAAGATCATAGAACCATAGAACCATGGAGTGGGTTGGGTTGGAAGGGACCCTAAATGTCACAGAATCATGGAATGGATTGGAAAGGACTCTGAAGATCACAGAACCACGGAGTATTGGGTTGGAAGAAACCTTAAAGCCAATCCAGTGGGATCCAAGAGAAGAAAAAGCACCTGGGCAAAAACACAGCTTTCATTCCCTCCTTTCTCCAACAAG
Seq C2 exon
GTCACGTTGAGGATGTTTAAGCAGAGGCAGACTCAGTCAGAACAGATTCCAGTGGGATACCAGCACCTGTCTGAGGTCTGCAAGCCATACAGAGTGGGTGAGAAATACCTGGAGTTCATCCAGGCTCTGCAGAAGAAAGACATTCCCATGGAACATTTTGAATTCGAGCCACTCTCTTCCGGAGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026345:ENSGALT00000046009:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCTTTGTACAGGATGTG
R:
CTGCCCTCCGGAAGAGAGTG
Band lengths:
318-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]