GgaINT1014047 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9563719-9564406:+
Coord C1 exon
chr17:9563719-9563785
Coord A exon
chr17:9563786-9564094
Coord C2 exon
chr17:9564095-9564406
Length
309 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CTTATCGCCTTAATTTGCAGGTA
3' ss Score
10.44
Exon sequences
Seq C1 exon
CGCCAGAGGCGGTGGTGGCTCCGCGGGGTCCCGGCGGTAGCGGACGAGACGAGGCCGCGGGCGGGCG
Seq A exon
GTGAGGGCGCGGGGCGGCGGGAGCGGGCTCTACTGCAGCGCTCGCCCGGGGACCGCGGCCGCCTCCGAACAGGCGGCAGCGGCCGGGAACGGCCTGCCGGGCTGCCCGAGCTCGCCCCGCCGTTGGTGGGGCCGCGGCCGCCCGCGCCGCGCTGCCCCGGAGCCGGGCCCAGTTCTGGGGTTGGGGCACCCGAGGGTCCCGTGCGGGGCGGCTGTGTCTTGGCGGGCTGTGACGGGTAATATTAAAAAGCGTTATCTCTAACGGGGGTGGACGTTTTCAGCACGGAAGCCTTATCGCCTTAATTTGCAG
Seq C2 exon
GTATTGTTAGGCCATGGAGGCTTTAATGGAACGAGAAATGCAATAAAGCTGAGTGGATGAGGCACGAAATTAAATCTCAGCATCTGGAAGCTGTAAGCAGAGCATCGATGTATTAGCTGTATCACAGACAGTGGCTTTTTGAAGCGCCTGGCTCTGCCAGTGCTACAGAGTAGTAAAATGTTTGCAAAACTGAAGAAGAAGATCGCAGAAGAGGCAGCTATTGCTCCCAGGCCCGGGGGGGCGGCCAGGATACCGCGCTCCATCAGCAAAGAGTCCATCACGTCCGTGGGAGCGGACTCGGGAGACGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.711
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCGGACGAGACGAGG
R:
AGTCGTCTCCCGAGTCCG
Band lengths:
342-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]