GgaINT1014138 @ galGal4
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5845196-5846127:+
Coord C1 exon
chr17:5845196-5845245
Coord A exon
chr17:5845246-5846043
Coord C2 exon
chr17:5846044-5846127
Length
798 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TGTGTGTTTCCTTCCCACAGATT
3' ss Score
13.32
Exon sequences
Seq C1 exon
CTGCCATTAACCTAGCAAAGCTGAAGCTTTTCAGGCATTACTATGTTATG
Seq A exon
GTAAGTTTAAAACAAAACAAACAAACATACAAGCAAAACCCAACCAAACAAATCCAGCAGCTGTGTACCTATGCATACAGAGCATTTGGAAGCCATTCCAGCTTTTTGCTGAATTACTTGTTGGAAGCTGCTATAACTCATGAATGGGGTGGAAATGTTGCCAGTTCTGTGGCAGTGCTGTGCTTTGGCATCTTGGCCAACTGGGTTACAGACCTCAAAGCAACTTCCCTTCTTTTCCAAGTAGTTGCATCCTTCTATCTTTTAAATTGGTTCCAGCTATCTGTAATGCTTACTAATTTCCTCTGGAGACAGCTTGAGCTGTCAGTTGAATCGATGGGCTTGAATAAAGTACAATAAACTTAGTAAAAACCAAACTTGGGAGCAAATGGTGCCTTGAGATGCATGCATACAGCTTCTTATTAAGTCAGTGGGAGCCTTGAGCCTACCTCCCAAGAGAGTATATCCTCCTTAATGATTTCCAGTGGTCTCATTTCAGACTCTAAGAAGCGTTAAGAGTAATAAATTACAATACTGATTCTTGAATTCTACAAAATCCAAATGCTTAAAGCATTTTCCTGATGTACCTTTAATGTTAGTAGCAGCTTGAGTCATTTGGATGTTCAACAAACTGCAGAGCCCTCAGCCTTATATCTTCCTTGTTTATCGAAGGAGCATAATAGTGCTAATCTGACATAATGAGGTGTCTGGGAACAGCTTAAGCTATTTCTCTGGAAAAATAGGTTCAGTCAGGATGATGCTATTGTTCTCGCTCACAGACTGTGTGTTTCCTTCCCACAG
Seq C2 exon
ATTGTGTGTTACATTTACTTCACACAAATCATTGCAATTCTCATAAAGATTGCTGTTCCATTCCAGTGGAAATGGCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]