GgaINT1014449 @ galGal4
Intron Retention
Gene
ENSGALG00000001109 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr27:1065291-1066433:+
Coord C1 exon
chr27:1065291-1065351
Coord A exon
chr27:1065352-1066344
Coord C2 exon
chr27:1066345-1066433
Length
993 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAGTAACTAAATTCTTTCAGTTG
3' ss Score
3.58
Exon sequences
Seq C1 exon
AGTTGCTAGAGCAGCCAAATTCCCCTTTTGTTTGGGGTATGACCAACTCTGGTATAAACAG
Seq A exon
GTAAGGAGTGCAAATTTCATAACTTACAACAGTGTTTTGTATAGAAAAATATTGCAGCCTACTTCCAGTCCAGTCTTGATTGCTGGACATTTGCTGGCTTTGCTGTTGTGCAGGCTCAGGGAAGAGGGGAAACATTAACAGTGAATGTCTTCATGCTGCAGGTTCATTGTTACCTTCTTTCTTTTCACTGACCCTTGCCAGAGAAGGATGCTCCGAGGGACTGGCCAGTGTGTAGTTCCACTGGATATCTGGCCAATATATGAGATGTGTGCCAGTATGTTGACTTGGAAATGTGGCCAGATGCCTCCCTTTGGAGGAGTTTGTTCAGTTACTCCTCTCCTCTTGAACTAATGGTTAGCTAGCAGTCCTTTGTGACCTCTTGTTGCATTATACTTGGCAGATGTGCTGGCATAAGGACCCTGTGTTAGCAGAAATCCCCTCTTGCCTTTTGTAAAGTGTGATCACAGCGTAGGTTTAGATGAAGGAAAAGCGTGGTGGGCAGTTGTGCACTTGATGGAGCAGCCTTGCCTGACGTCATTGAGCCAACAGTAGATCACTATTGCAGTCTGTATATGAGGTGTGATTACAGCACCAGATTTACTAAAGTATGTTTTAAGGTTTGTCTAAGCCAGTGTGCTTAGTTTTCTTCTGGAAAAGAAGAAGAAGAAGTGTTCTTCTTTTCCAGAAGAAAACTAAGCACACTGGCTTAGACAACAGAAGAAACAGTTTTCCAGCTGGCGGTCTTGCAGTTATATATGGGCTCAAGCATGATGTAGTCCTCGTGTGAAAGGTTTCAACAGTGCTGTGTAGCTTCACTCATTATAATCTCTGGAAGACTTTCTAGTGTTTAGAGCATATATAGATATTCTAAATATCACCACTGCCAGGCAGCAAAGTATCATCTCCTTGTGTCCCTGTTCTGCTCCATACTATTGTAAAGTGCATAAATTTGAGCAAGTACATTAGTCAAGAGGAGTAACTAAATTCTTTCAG
Seq C2 exon
TTGCAGTGTCACCTCTGGACAAAAGAATTACCTTCCTTCAAGTGTACGTGCACCTGAGTCCTCCCCATATACTGCATCGTGGAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001109:ENSGALT00000001663:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]