GgaINT1014880 @ galGal4
Intron Retention
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10444045-10444404:+
Coord C1 exon
chr6:10444045-10444193
Coord A exon
chr6:10444194-10444284
Coord C2 exon
chr6:10444285-10444404
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCCTCTCCTTTCTCCTGCAGCTC
3' ss Score
12.98
Exon sequences
Seq C1 exon
AGAAGGGTGATTTCCTCGCTGTTGACCTGGGTGGCTCCCAGTTTCGTGCCCTCAAGGTGAAGGTGTTTAATGATGGGAAACAGAGCAGCCAACTGGAGAGCGAGTTTTACCCCACACCAAAGGAGGTCATACAGGGCAGTGGAGCAGAG
Seq A exon
GTAGGCCATGCAGGGTCGTTGGTGGTGGTGACGTGCTCCGGGAAGTGTCTGCTAGACAAAGGCTGACTCTGCCCTCTCCTTTCTCCTGCAG
Seq C2 exon
CTCTTCAGTTATGTTGCTGACTGTCTGTCAGACTTCATGGAGTCCAGAAACCTGAAGCATGAGAAGTTACCTCTTGGCTTTACGTTCTCTTTTCCATGCAAACAGACCAAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGTGCCCTCAAGGTGAA
R:
GCTTCAGGTTTCTGGACTCCA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]