GgaINT1014886 @ galGal4
Intron Retention
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10448490-10449638:+
Coord C1 exon
chr6:10448490-10448723
Coord A exon
chr6:10448724-10449333
Coord C2 exon
chr6:10449334-10449638
Length
610 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AATGTTCTTTATTCTTGTAGATA
3' ss Score
8.51
Exon sequences
Seq C1 exon
ATATAAGGAAGGTCTGAGCAACACAAAGGAGATCCTTACAGAGCTGAACCTGTTTCCCTCTGAAGACGACTGCATTGCCGTTCAGCATGTCTGCACCATCGTGTCCTTCCGCTCAGCCAATCTCTGTGCTGCAGCCCTAGCAGCCATACTGACCCGACTGAGAGAGAATAAAAAACTGCTACGGCTGCGAACCACTGTTGGGATTGATGGAGGACTCTATAAAACCCACCCCCA
Seq A exon
GTAAGTAGCTAAAAAGGGTTTGATAATTGCTGGACGCATGTTGATGTGGCAGTCTCCACATGCATATATGTGTGGCTTTTGGAGAAGTGTGCTTATTCTGCTGCAGGGTTGGGATGAGATGTGGTGGAATGTATATGATCAGATTGGCCTTATTATCGCAAAGCTGCTTCAGGAGCTTTAGAGATTGGGGTGGGACTGGGGGAGGGAACAACATGACAGGGCATACTGGCATCTGAGTAAGAGCAGTTGATTTTCCAAGTGATTCCTGAGCATCCAGGACACTTGCTGTTCATTGTTTCCTTCTTTCTGTTTTCCCTATGCTTACATTTCTCCCACTCTGAAGGCTTATTATCTGCTTTCTGATGGCGGGCTCTCCATTCTTGCCTGGCTTTTCCCCCTTGGCACTCGCGCTTATTTAGAGGTATCTTCACATTCCTGTAAGCACACAGCTTCTGCGGAACAGCCAGAAATCAGAAGCACTGTGCCTGTCTCCTGGTTTCTGACTCTATGCTCCTCTGGCAGCGCTTCAGTGCTTGTGGTGTTGAATGCGTACACGCATTAGAAGCAAATGCAAAGCAAACCATGTGCGAAATGTTCTTTATTCTTGTAG
Seq C2 exon
ATACCCCAAACGCCTGCACAAGGTAGTGAGAAGGCTGGTCCCAAATTGTGATGTTCGGTTCCTCCTCTCTCAGAGTGGCAGCGCAAAGGGGGCTGCCATGGTGACGGCGGTGGCACACAGGCTGGCAGCTCAGCGCAAGAAAATTGATGCTGTTCTTGCACCTTTCGTGCTAACCCTGGAGACCCTCAGAGATGTAAAGAACAAAATGAGGACCGAGCTGGAGTATGGGCTAAAGAGAGAGACGCAAGACAGGGCTACAGTGAAGATGTTGCCAACGTATGTCTGTGGGACACCAGATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGACGACTGCATTGCC
R:
ACGAAAGGTGCAAGAACAGCA
Band lengths:
344-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]