GgaINT1015791 @ galGal4
Intron Retention
Gene
ENSGALG00000017414 | JUP
Description
junction plakoglobin [Source:RefSeq peptide;Acc:NP_001254482]
Coordinates
chr27:4658140-4659187:-
Coord C1 exon
chr27:4659024-4659187
Coord A exon
chr27:4658948-4659023
Coord C2 exon
chr27:4658140-4658947
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACACCCACTCCTGTGTGCAGGCG
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGGTGGACCCCGGCTACCGCCCCATGTACTCGGGTGACATCCCCCTGGACCCCATTGACATGCACATGGACATGGATGGAGATTACCCCATGGACGCCTACAGTGATGGCGTCCGCGCGCCCTTCACTGACCATATGCTCGCCTGACCGCCCGCACAACAACAG
Seq A exon
GTAGGGGGGCCGGGGGGGGCTGGGGGGCCGCGTCCCACTCCCCAAAGCCCGCAGTGACACCCACTCCTGTGTGCAG
Seq C2 exon
GCGTTTCCTCCGTGCGGAGGACGGCCCCAGAGCTGAGCAATTGCGAGAAGGACTCGGGAGACAGAAGTGCCTGAAGACAAACGTCCCCATTCCCAGAGAGGTTTCATCTTTCCGTTGTATTTTCTCTTTGCTGTGGGTCTGTGGAGGTCCTTCCTCCTGGGACTGCTTCGAGCACCTACTGCCGCATCCAGCATCCAAATACTGTTTCTGAAGCTTTAAAACACACAAATCCCGCATCTTTATCAACCTTTCATTGGCAGAATAATCTTTTCTATGAATATATATATTTCCTTTTTATTTTTAATATGGTGCCAACGGCTTTTGCCGTCTTTAAGTTTGTGCTTTCTAACGTCCCCACGATTTGTTCTGCGCGTCGGCGTTCCAGGGAAGGGATCTGATGGCAGAAACCCTTTGTTTTCTGCAAACTCAGCTGTCAGAGGGGCAGTCCGGGGTTTGCGGGGAACAAAGGGAGCCGTTCCCGGAGCCCTGAGGTTCGGATCTCGGATCCGCCACTGGGAGCCGTCTGTGTCCCCGCAGTGCCCATAGAGGAGTGACTCCAGCTTTAGGAACTGTGTCCTTGTACCGATCTCTGTTGCACATTTTAACCCTTTCCCCTTCTTTTGGTGAGTGGTGTTTCCGTCCCCTTTCCTTCCCTGATGACTTTTCTGAAGAGGCTCTGGATCTGATGGTTTAACGCTCCGCCTGGAAGTGGACGGACCGCAGTGTGGGTCCGGAAGGGAAGATTTTATTATTTCTATAAGTTGTTTTTGTATAGACCAAAGCAAAGAATAAAATAACCCCCCCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017414:ENSGALT00000028102:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCCCATGGACGCCTACA
R:
CTCTGGGAATGGGGACGTTTG
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]