GgaINT1015901 @ galGal4
Intron Retention
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:333939-334419:+
Coord C1 exon
chr2:333939-334132
Coord A exon
chr2:334133-334319
Coord C2 exon
chr2:334320-334419
Length
187 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
CTCACCGCCCCCTCCTGCAGACC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGAAGAACGACATTTTTGGGGAACCGCTGAACCTGTACGCGCGGCCGGGGAAGTCCAACGCCGACGTGCGCGCGCTCACCTACTGCGACCTGCACAAGATCCACCGCGAGGACCTGCTGGAGGTGCTGGACATGTACCCCGAGTTCTCCGACCACTTCTGGTCCAGCCTGGAGATCACCTTCAACCTGCGTGAT
Seq A exon
GTGAGGGAGGGGGCAGTTGGGGGGTGGAGGTGGGAGGGGGCACCATGGGGACGTGGCTGGGATGTGGCACTGATGGGGACGCGGCACCGCCGGTTGGTGCCGTGTGCTCCCGTCACCGTGCCGTAGCCCACTCCCCACACCCGTGGGGGTCCGTGGCACCACCCCCCCTCACCGCCCCCTCCTGCAG
Seq C2 exon
ACCAACATGATCCCCGGTTCCCCGGGCAGCGATGAACTGGACAGCGGCTTCAACCGCCTGCGCAAACGCAAGCTCTCCTTCCGCCGCCGCACGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043:ENSGALT00000045642:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.647
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCGCTGAACCTGTACG
R:
CGGAAGGAGAGCTTGCGTTT
Band lengths:
258-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]