GgaINT1016109 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1135225-1135601:+
Coord C1 exon
chr26:1135225-1135351
Coord A exon
chr26:1135352-1135422
Coord C2 exon
chr26:1135423-1135601
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCCCTCCGTGACACACACAGAGG
3' ss Score
3.65
Exon sequences
Seq C1 exon
CAAATGCCCCGAGGGCACCTGTGATGGCTGCACCTTCCACCTCCTGTGGGCAACGGCCGAGGGCTGCCCGCGCTGCTCCGCCAACCACTTCCGCGCCATCGTGGGCGCTTGCCAGGGCGGCGTGCAG
Seq A exon
GTAGGGGACACACGGGGGCGACGGGGACAGCGGGGATGTCACCACCCTCACCCCCTCCGTGACACACACAG
Seq C2 exon
AGGACCACGTATGTGTGGAAGGAGCCGCGGCTGTGCCACGGGGGGCAACGCCTGCCCGCCCCCCGGGTCCGCCCGTGCCGCAGCGCTGAGTTCTGGCTGAAGGTGGGCGTCTCGGTGGGGACGTGTGTGGCCGTGCTGCTGGCTGCCCTGGCTGCCTACTTCTGGAAGAAGAACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCGCCAACCACTTC
R:
CACACGTCCCCACCGAGA
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]