GgaINT1016544 @ galGal4
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11551886-11552520:+
Coord C1 exon
chr12:11551886-11552258
Coord A exon
chr12:11552259-11552335
Coord C2 exon
chr12:11552336-11552520
Length
77 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GGCACCTCCTTGCTTTGCAGGCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
CCTGCGACTGTGACCCCCGCGGCATCGCCAGCACCCAGTGCCATCATGGCAGTGGGCACTGCGACTGCCGGCCCGGCATCTCAGGCGTCCGCTGCGACCAGTGCGCCCGGGGCTTTTCTGGCACCTTCCCGGCCTGCCAGCCTTGCCACCCCTGCTTTGGGGACTGGGACCGCGTGGTGCAGGACCTGGCCTCCCGCACCCGGGCTCTGGAGCAGCGGGCCAGCCTCCTGCAGCACACCGGAGCTGCCGGTGCCTTCGAGGGCACCTTCCGGCGGCTGGAGGAGAGCCTGGCCACCATACGTGATGCAGTGGCTGCCCGCAATGCCACCGCCGCCACTGCCACGTTCCTGACACGTGCCACAGAGGGGTTGCG
Seq A exon
GTGAGCACAGGGTGTGGGGCACAGCTCTGGGGACATGGGGCAGAGCTCTGTGAGCGTGGCACCTCCTTGCTTTGCAG
Seq C2 exon
GCAGCAGATCGGGGAAGCCACTGAGAAGCTGACACGGCTGGAGAGTGAGCTGACGGTGGCACAGGATGCCAATTTCAACGCCAGCCACGTGCTGGGCATGGTGGACCGGGGGGCCCGCACCCTCAACCACAGCCTACGTGAGCTGGAGCAGCGGCTGCATGCACTCAAGACCTCAAATTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=40.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATACGTGATGCAGTGG
R:
GCTGGCGTTGAAATTGGCATC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]