GgaINT1016963 @ galGal4
Intron Retention
Gene
ENSGALG00000023172 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:HGNC:25323]
Coordinates
chr4:48994740-48995119:+
Coord C1 exon
chr4:48994740-48994868
Coord A exon
chr4:48994869-48995011
Coord C2 exon
chr4:48995012-48995119
Length
143 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGATGCTGTGTGTCCCCAGGCT
3' ss Score
10.19
Exon sequences
Seq C1 exon
AGCGCGGTGCGATTGGCAGTGTAGAGCTGGATGGTTCCCACTTCAGGCTGGTGCGGGAGGGACTGCACGGTCTCAGGCTTTTTGCCATCGGAGATGGCTTTCTGCTCTGGTCAACAACCACAACCAATG
Seq A exon
GTGAGACCATCTAGGGGCTGCTGGGCTCCCTCTGGCTTCTGCTGTCCCAGGGCTTGGAGTCTCTGCCAGGCCCCGTGGGGCACTGGGTAGGGACAGGCCAGAGGAGCCCCATGCCAGGCAGGGCTGATGCTGTGTGTCCCCAG
Seq C2 exon
GCTCCAGCAAGGTCTGGCACAGCCGGCTGGAGCAGGCCAAGAGCTGGTGGTTCCTGATGGAGCAAGAGTTGGTGGCCTTGAGAATTTACAGCCAGTTCTCACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023172:ENSGALT00000037928:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGGCAGTGTAGAGCTGG
R:
CTTCCTGTGAGAACTGGCTGT
Band lengths:
228-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]