GgaINT1017191 @ galGal4
Intron Retention
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37218409-37218754:-
Coord C1 exon
chr5:37218629-37218754
Coord A exon
chr5:37218532-37218628
Coord C2 exon
chr5:37218409-37218531
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTGGGCCTGATTTTGCAGATG
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATGTGAATGAGTGCCTGAACAGTGAGATCTGCAGCCCCAATGGTGAGTGTCTCAACAGCCACGGATCCTACTTCTGCATCTGTGCGCCTGGCTTCTCCAGCTCAGATGGAGGAGTCAACTGCCAAG
Seq A exon
GTGAGCTGGTGGGTGGTAGGGATATAGCTCGGGTCCTGCCTCTTCCTCTCTCACTTGCTGCAAGATCCAGCTTGATGATTTGGGCCTGATTTTGCAG
Seq C2 exon
ATGTGGATGAATGTACAGACAAATCCCGGTGCTCACAAGGCCAGTGCCTGAACACAGAAGGCTCCTACAGGTGTCTGTGTGAAAATGGGTTCAAACACTCCCAGGAGACTGATGACTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258:ENSGALT00000016690:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGTGAGATCTGCAGCCC
R:
GAGCCTTCTGTGTTCAGGCAC
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]