GgaINT1018089 @ galGal4
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178478632-178481225:-
Coord C1 exon
chr1:178481203-178481225
Coord A exon
chr1:178478729-178481202
Coord C2 exon
chr1:178478632-178478728
Length
2474 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAAT
5' ss Score
-0.24
3' ss Seq
ATCCTTTTTCTTAATAACAGGAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GGTCTATAGGCAGGATGGAAGAA
Seq A exon
GTGAATTTTGAATGCTAAGAAAGAGGGGGAGTGCTTTGGGAGAGAAGTGTCTTTTTTAGGTATGAAATGTGAATCTCATGTTTGCTATGTGTACGTACTTAAAATGAAAACTTCTGTTCCACAGATGTGTGCTGTCCTTTTTAGCTTCTTGTTTCTCCCACCTTCAACAGCTGCCTCAGTTTGGCTTTTGTCTGCTTGCATAGTGAGGCATTCAGTTGTCTAGCAGCTATCCTGCTGCACCATGGAGTATGCTTCTGAGATGAGCACTTGATTTCTCTCAGAAGCCAGCCTCTCAGTTAGACTTCATGTCTGTTAGTGGCTTCCGAAGGATTGGAATGCTGAAATTGCTTCTAAACCCAAATTGGTGGCCCTGCCTGTGGCAGGGGGTTGGAGCTTGATGATCCTTGAGGTTGCTTCCAACCCAAGCCATTCTATGATCTCCCAGATAATTGCCCAGCTTGTCTTGTCTTGTTGGAATTCCTGTACTGCTTTCAGGAGATGCTGAGTTGCTCAACTTGGTGACACATTAATTACAAACGCTGTCCCCTTTCTAACAAACGAGCTAATCAAATACTAACATACTGTTTGATTTCTCTTATTTAATACAGTAGTATTGTAAGAAAAACAAGAAGATAAAATAATTTTTAAAAACGTAGTTGTATATGTGGGGAATAAAGGAGTATTTCTGGAATGTTTATGAGGAAAATCTGCTTTTGGAGAATATGTTTTTCAGCTTCTTCACACTATTCTGATACAGTTCGTAGTTCTTAAAAAAGAATCATTGGCTGCCTGGAGAAACTCCTTCCTGATTTGTAACTGGGCTGCAGCCACGGTACCTTGGTGCTTATTGGATTATGTCCCACTGCTTCTGAGGCCATAATTCTGTGGTGACAAGTGTCTTATTTCTGTAGGTTCAGCTGCAGTCTTCTGAGGCTGATGTCTGTATGGGATAGGCACCTTAACGTAAGCACATTGATTTGTTTTGGACAGAGAATAGTAGTATTGCATGGAATAACCTCAGAGCTGAGCTACACAAAGTACTCTTTTTGTGGGAGCTTAGTGGTGAAAGCTCTTGTAAACAAGGTTAAGCAATAGCTGTGAGGCACAGCTGGTTTCACACAGCTATTTAACTCATTTTCTTTACAGTAGTCACTAACCAAGTAATGAAGAGCGATGGCATTTCAAAGTATTTTCTCATGGTTTGAGGCTATAGCATTCATAAGAGAGAAGCATCTGATAATCAGATACATCCTTGGAATTCTGTTTATTACCAACAGTGTACAAACCCCATCACCTCAAATATGAAGAAATCAGCAGCAGGGTGAAGGTTGGTTTTCTTATTGCTCTTCAGCCAGCACTCTCACTAGGTGTAGCTTGGAAGGCATTCTGCTTTTTGCCGTCCATCTCCTGGATGCTGAAATGATGTTGTCTGTATCCGGCCGGTTACTGCCCAGAGCACCAGTGGACTCTGTGTGGGTGGGCTCAGTGCAGAGCTTTGGGGTATGCTGTGTGTCATGAAGTTGTGGCCCAAGTATATCGTTTTTTTTAATTTAAAGCACAGCCTTTGTTTCAGCTGTCTGACTCTTCTCTGATTACAGAACACTGTCACGTCAGTCTGTGGTACAGTATTCCCTGTTTGGAGTCATTTTGTGTGATGAGCCCTTCCTTTTGATTTACCTTCTAAAAATAAGCGTGTAGGGTACACTGTGCATCTCATCAACATCAGGAAATCTGGAACAGAACTCAAGTTTTTTAACAGCCCTTGTGCTTAGCAGTATCTGGTAATGTTGTCAGTTGTTTGCTCCTACTGTGGGCACCTGCCTGGGATGATGTCTGTTTGTGCTGCTGGTTCATGGTGTCTGTCACCAAAAGGCAAAGTTTTGAAGAGGAAAGAAGGAAGGCTTCACGATGTACTAAATTCATTTAGTTTTTTTACCTTTCTAAGAAATGGCAGCATTAATGATTCTGTGATCACTTCAGGACTTGGATGTTTATTTGTGCCTCTTTGAGTTGTAGTCTCCTTATTTGGTACCTTGGGATTTCAGCTGTCGTACCTCAGTAGAGAGAACACTTCTAAGAGAGGGTTCCGGTTTCTGCTTGCTTTGGAGTCACAAATGACGCCCCAGCTGACATTTCAGACTCAGAATGTTAAATAAGAGTGGCTTCCTGGTGTGTTTTGTCTTTGCTGTGTGTCATTTTAGGAAACGGTAACGCAGCCTAATTTTAAATGTATGCTGGTTTTGATATGTGTGAGTGCCTCACACGGCTGGGATGCTGCAGAACTCCAAACTGAAGTTCTTTAATTTGGAAGATCTTTTCTTCTTAGTGAAGAAGCCTTCCCAGAACAGCTCCTGTCTCACCCATTTAGTTCTTTTCTTAAGAGTGTTTGTAAGTCTGTTGTCCATAAGATTTCAGTAGTGTTATTTTCCACTTTCTCAGTTCCACTCTCATTTGATCCTTTTTCTTAATAACAG
Seq C2 exon
GAGAAAGAAATAAAGAAATCTGAAATGAAAGAAAAATCTGTAAAAAAAGAGTCTGAAAAAGAAGAAAAGATCAGAAAAGAACAGAAGGTCGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.697
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]