GgaINT1018236 @ galGal4
Intron Retention
Gene
ENSGALG00000017033 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr1:169837553-169838493:+
Coord C1 exon
chr1:169837553-169837563
Coord A exon
chr1:169837564-169838412
Coord C2 exon
chr1:169838413-169838493
Length
849 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
3' ss Seq
AATATCATTTTTCTTTTTTGTTT
3' ss Score
0.48
Exon sequences
Seq C1 exon
TAAAACCAGAG
Seq A exon
GTGAAATTCTAAGGTCGAGAAAGGCAGATGTTGCCAGGGCAGCTGTGAATATGTATTAACATTATGTGGGAGCTATTAGAATTTCAGTGGGAGCCTACAAAACCAAGGACGACTGTATGATTAAAAGAATCATTTGTCCTAAGGTTCAGTGTGTTCTACAGTAAAGGCATTGGTTTTCCTTAGTTTCTGTTTATATGAAAATTTATTTTGATTACTTGTTGAACTCTTGGAATTTTGGATTTTTTTTTAGTATAGGCTCTTGCCTGTTTAAAAATAGATAGAATAAAATATTTTCACACTCAGAAGGGAGAGAGCACCAGGGTGATGCTGTTTAAAATATATCATACAGATATGCTTTATGTGTTTGCCGTATGGCACAGGAGGTGGCTGTGTAATCTTCCAAAAAGGCTATTTATGTCAGAAAGCAGGAATTGTTTGATTAAACTGTTGCCTTTTCTCTTCCCGAATTTTGTAATAATATTTACATTAAAAAAAACCAATCACCAAATTCTCTTTTTAGTTACAACTGTGTGAAGATACTTAGTACTGTAGTTTGATACTGTTGAACTGCGTTCCGATTCCTAAATATTTCAGTAAAAAATGATTGCAAATATAATATTTGACTTATGCTCATCCTTTCACGCAGAAGTGTTTTGGGAAGCTCTGTTAGAGAGTAATAATTCAGTCATAAACACACTGTTAAAAGCCTGAGGATTTTGTGAGAGTCACTATCTCGTTTTTTTTCTCCAGAGGTCTGTTAGTTCATGAGAATATTTTGTGCTTTTAGATTTTTTTATCTGGCAATATTGTGAAGTGTTGTGAAATACTGAATATCATTTTTCTTTTTTG
Seq C2 exon
TTTATAGAAGTCTTAAAGCAGGAAAAAGGCTTAATATATTCACTAAGGCTTCTCCAGAAACGGAAAACGCACTGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017033:ENSGALT00000027520:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.384
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(1.3=100)
A:
NA
C2:
PF154331=MRP-S31=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]