GgaINT1018451 @ galGal4
Intron Retention
Gene
ENSGALG00000020492 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr5:14425221-14425888:+
Coord C1 exon
chr5:14425221-14425351
Coord A exon
chr5:14425352-14425800
Coord C2 exon
chr5:14425801-14425888
Length
449 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAAA
5' ss Score
-5.37
3' ss Seq
GTAACATTGAATTTCTTCAGAGA
3' ss Score
5.29
Exon sequences
Seq C1 exon
TGTCATCAAACTGCCTTACGCCAGCAATGGAATTCAAATAGCACCTTATGGGCGCAGTGTCCGCCTTGTTGCCAAACTGATGGAGATGGAACTAGTTGTCATGTGGAACAATGAGGACTACCTCATGGTTA
Seq A exon
GTAAAATATTCTCATGATGCAGAAAATAAAATTCTCACTGACTTACTGGATTGACAGTTTTTAGATATAATTGGTGCTTTTTGGATGTGCTTACTATTTGGGTATTTATTTTATTTCCTGTTTCATCTGTTAACCTTCTTGCTTTTTATACCTACGTTTTTTTAAATTCCAGCATTGGTTGTTATCTGAAGCAACCAGTGTTGAGATCTGTGGATGTTTTCTTGGATTCTGTGCTTTCCTGAGGCTATTCCAGCGGCATGATACACTACATTCCAGCACATGCTATATTTTACACACAGTCCAATTATTTTCTGTGATTTAAGATTTTCAAGATAATTTGTTGATTATAATCAGAAGCAAGATTACCACTTCACTATCTAAAGCAATAAATAAATGAATAACCTTCCTCTGAAAGTAAATTTTCTTCCTGTAACATTGAATTTCTTCAG
Seq C2 exon
AGAACAATCCTGAAATACATGCCTTGTCAACAAAGTTACAAAATGAAACAGTATCTTTTCCTTTTCTATTTCTCTCCAGCTCCTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(23.0=100)
A:
NA
C2:
PF0009420=VWD=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACTGCCTTACGCCAGC
R:
TGCAAGGAGCTGGAGAGAAAT
Band lengths:
215-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]