GgaINT1018468 @ galGal4
Intron Retention
Gene
ENSGALG00000020492 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr5:14457492-14457920:+
Coord C1 exon
chr5:14457492-14457537
Coord A exon
chr5:14457538-14457869
Coord C2 exon
chr5:14457870-14457920
Length
332 bp
Sequences
Splice sites
5' ss Seq
AGGGGCAGT
5' ss Score
-1.8
3' ss Seq
TTCACCAATGCTTGTTTCATCTA
3' ss Score
-3.01
Exon sequences
Seq C1 exon
AACAGCAGGCTTCCTGCAGTGCACTGATGTTTACATGGGGAGGAGG
Seq A exon
GGCAGTTATAAATGTCTTTATGTCTTAACCGCTGTATGAGGACTCAGGAAACAAAGAACTTCTCAATTTCAGCCAATTCCTGCATTCTCTTTTGGGTTAGTTCCACACACAAAGGAGAACCTATCTGGAAAGTATACTGCAACCATATCATACTGCCTCTACTGTCTTTTTCCATCTTACCCCACTTTCACTGTGCATTCTCCTTTTTGTTGGCTCTTAGTTTATGACATGCAGGAAGAGGACAGTACATTAGTGTGTGTGATTCATTTTCAACATCTCCAGTTCCTACCTCAGTATTAAATGAGCCTTGCCTTCACCAATGCTTGTTTCAT
Seq C2 exon
CTATAACCTTTCTTCAAGCAGGGAGCCTGATGAGAATCATGCAGGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]