GgaINT1018479 @ galGal4
Intron Retention
Gene
ENSGALG00000013433 | MVB12A
Description
Gallus gallus family with sequence similarity 125, member A (FAM125A), mRNA. [Source:RefSeq mRNA;Acc:NM_001031355]
Coordinates
JH376279.1:119501-119797:+
Coord C1 exon
JH376279.1:119501-119599
Coord A exon
JH376279.1:119600-119707
Coord C2 exon
JH376279.1:119708-119797
Length
108 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
ACCCTCTGCGCACCCCACAGATC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GGGGAGGTGGCCGTCATGGCGGCGGAGGAGGAAGCGGCTCCGCTGAGCGGTGTGGGCTGGGCGGCGGGGCCCGAGTCGGCTCCAGCGGGCTGGAGCGTG
Seq A exon
GTATGAGGGGAAGCTGCGGCCCGACGGGAGGCTGCAAGACGAGGATGAGGCTGCAGTTCGAGGGGAGGCTCCGGTGCGGCCCGGCCTCACCCTCTGCGCACCCCACAG
Seq C2 exon
ATCACCACCAGCGTTGAGGGCAGCGCGGCCAACCTGGGCAAAGGCTTCGGACACAAGGGCGGGTACCTGTGTGTGAGCACCGCAGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433:ENSGALT00000029792:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(8.1=71.4)
A:
NA
C2:
PF102404=DUF2464=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTGGCCGTCATGG
R:
GTGCTCACACACAGGTACCC
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]