GgaINT1018550 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7562256-7563113:-
Coord C1 exon
chr14:7563005-7563113
Coord A exon
chr14:7562429-7563004
Coord C2 exon
chr14:7562256-7562428
Length
576 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ACTTTAACTTTTTCTTGTAGGCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
AGAGAAACAGGCTGCAGCCAAGACATTACGCCAGAAGGACAAGAAGCTGAAGGATGCATTGCTGCAGGTGGAGGACGAGAGAAAACAAGCAGAGCAATACAAAGATCAG
Seq A exon
GTATGAGTCTGCATCATAAGGGTCTTAGTTGAGGGCACAGAGATTTTCGAGTTTTACTGAAAGTTTTCAGGTTTCTACTTTTCCCAAGAAAGCAAGATTCCACATTACACCTCAAAGAAGGGTCTGTGCTAGGACAGCTATAAAGCCTTTTGCTACAGGACATGACAATTTGATTTTTCTTTCATGCTGAGACAAGTGCCAAAGCACTAGTCCTTGTCAATAAACCAGCTGCAACAGTCTGACTATACACGGTGATATATAGGACTCTGCACAACATCCCTTTTGGTACATGAATGGAGACCATGATCGCATTTTGTACCCTACTGACAGATATAACTTTACATAACATGTATCAACCTGCAAACCAGAAATGCAGAGTCAGGACTGTGTAGCAAAATAAACAATTAAGTTTGCATCAGCAAACTGAACTCCCACAAAGTAGCTATATTTACGTTTTTAGATTTTAAGTTTTGCCTTTGATAGTGGCCATTTCAATAGAAATATGAAATTTAAATGAGAATCTAAAGCTCTCAGATGTATTTCAACTTGAAGAATTACTTTAACTTTTTCTTGTAG
Seq C2 exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAGGCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAACAGGCTGCAGC
R:
TAGCTTGCTCTTCAGTGCTGC
Band lengths:
280-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]